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. 2015 Sep 11;5:14024. doi: 10.1038/srep14024

Table 5. Identified candidate targets for known and novel Cr-responsive miRNAs in radish.

miRNA Target gene No. Target gene description Target annotation At locus
miR156/157 Rsa#S43017568 Squamosa promoter-binding-like protein 3 SPL3 AT2G33810
  CL754.Contig1 Squamosa promoter-binding-like protein 15 SPL15 AT3G57920
  CL1121.Contig1 Squamosa promoter-binding-like protein 6 SPL6 AT1G69170
  CL7151.Contig1 Squamosa promoter-binding-like protein 13 SPL13 AT5G50670
  Unigene34872 Squamosa promoter-binding-like protein 9 SPL9 AT2G42200
miR159 Rsa#S42037487 Myb domain protein 101 MYB101 AT2G32460
  Rsa#S41979156 Putative transcription factor SPL SPL AT4G27330
  Unigene16165 Myb domain protein 104 MYB104 AT2G26950
miR160 Rsa#S42581764 Auxin response factor 16 ARF16 AT4G30080
  Unigene495 Aluminum-activated malate transporter 9 ALMT9 AT3G18440
miR164 Unigene26020 Transcription factor NAC1 NAC1 AT1G56010
  Rsa#S43010415 Ethylene-responsive transcription factor ERF073 HRE1 AT1G72360
miR165 CL6137.Contig2 Homeobox-leucine zipper protein ATHB-14 PHB AT2G34710
miR166 Unigene28911 Homeobox-leucine zipper protein ATHB-9 PHV AT1G30490
miR172 CL658.Contig1 Transcription factor IIIA TFIIIA AT1G72050
miR391 Unigene27169 Calcium-transporting ATPase 10 ACA10 AT4G29900
miR397 Unigene3675 Laccase 17 LAC17 AT5G60020
miR415 CL13325.Contig1 Ethylene-responsive transcription factor ERF116 ERF116 AT1G25470
miR824 CL1245.Contig2 Agamous-like MADS-box protein AGL16 AGL16 AT3G57230
miR825 CL538.Contig1 TIR-NBS-LRR class disease resistance protein   AT1G63880
  Unigene16565 TIR-NBS-LRR class disease resistance protein   AT1G63880
miR854 CL5587.Contig1 WRKY DNA-binding protein 26 WRKY26 AT5G07100
miR1885 CL10476.Contig1 TIR-NBS-LRR class disease resistance protein   AT1G63880
miR4993 CL4937.Contig1 DEAD-box ATP-dependent RNA helicase 52   AT3G58570
  CL12544.Contig1 Heavy metal transport/detoxification domain-containing protein   AT5G24580
  CL2080.Contig2 Translation initiation factor IF-3   AT4G30690
miR5265 Unigene11660 Metal-nicotianamine transporter YSL1 YSL1 AT4G24120
miR5671 Unigene10987 Putative copper-transporting ATPase HMA5 HMA5 AT1G63440
miR5293 Rsa#S42010504 Transcription factor TCP15 TCP15 AT1G69690
  CL2525.Contig3 HSP90-like protein GRP94 SHD AT4G24190
  CL3795.Contig3 cytochrome P450 90A1 CPD AT5G05690
  Unigene10271 Transcription factor TCP21 TCP21 AT5G08330
  CL2041.Contig2 Putative galacturonosyltransferase-like 7 GATL7 AT3G62660
  CL10461.Contig2 Mitogen-activated protein kinase kinase kinase 1 MEKK1 AT4G08500
  Rsa#S42588632 Transcription factor TCP6 TCP6 AT5G41030
  CL8348.Contig1 Ethylene-responsive transcription factor ERF094 ORA59 AT1G06160
miR7767 CL243.Contig2 ABC transporter G family member 33 PDR5 AT2G37280
rsa-miRn16 CL443.Contig1 Putative WRKY transcription factor 42 WRKY42 AT4G04450
rsa-miRn20 Rsa#S42580584 Auxin signaling F-box 3 protein AFB3 AT1G12820
  CL4893.Contig2 Protein TRANSPORT INHIBITOR RESPONSE 1 TIR1 AT3G62980
rsa-miRn28 CL335.Contig2 Nicotinate phosphoribosyltransferase 1 NAPRT1 AT4G36940
rsa-miRn39 CL11639.Contig2 Heat shock protein 81-2 HSP81-2 AT5G56030
rsa-miRn44 Unigene1136 proline-rich family protein   AT1G02405
  CL11490.Contig1 Auxin response factor 2 ARF2 AT5G62000
  Unigene2794 Heavy-metal-associated domain-containing protein   AT1G57780
  Rsa#S42032440 Transcription factor bHLH147 bHLH147 AT3G17100
  Unigene14136 Heavy metal transport/detoxification domain-containing protein   AT5G24580
  FD958446 Thioredoxin-like protein CITRX TRXz AT3G06730
  CL6144.Contig1 Ethylene-responsive transcription factor 7 ERF7 AT3G20310
  CL1166.Contig1 bZIP protein bZIP AT5G04840
rsa-miRn55 CL5442.Contig2 ABC transporter D family member 1 PXA1 AT4G39850