Table 7.
The up-regulated expression of bHLH TFs in each comparison
| Genotype | GeneID | log2 ratio | P-value | q-value | Gene description |
|---|---|---|---|---|---|
| R1 | Comp150821_c0 | 1.0287 | 0.0001158 | 0.0017186 | Transcription factor ILR3 OS = Arabidopsis thaliana GN = ILR3 PE = 1 SV = 1 |
| Comp157296_c0 | 1.3757 | 1.45E-25 | 9.54E-24 | Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1 | |
| Comp156748_c0 | 1.4473 | 8.95E-07 | 1.82E-05 | Transcription factor bHLH49 OS = Arabidopsis thaliana GN = BHLH49 PE = 2 SV = 1 | |
| Comp152649_c0 | 4.6376 | 5.91E-14 | 2.23E-12 | Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1 | |
| Comp151458_c0 | 4.8684 | 5.49E-93 | 1.38E-90 | Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1 | |
| Comp155000_c0 | 1.8371 | 4.24E-22 | 2.47E-20 | Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1 | |
| Comp152649_c0 | 4.6376 | 5.91E-14 | 2.23E-12 | Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1 | |
| R2 | Comp150821_c0 | 1.0589 | 1.49E-05 | 0.0002559 | Transcription factor ILR3 OS = Arabidopsis thaliana GN = ILR3 PE = 1 SV = 1 |
| Comp151458_c0 | 5.295 | 2.09E-133 | 1.03E-130 | Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1 | |
| Comp152402_c0 | 2.7546 | 7.47E-25 | 5.06E-23 | Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1 | |
| Comp152649_c0 | 4.3428 | 7.24E-12 | 2.46E-10 | Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1 | |
| Comp155000_c0 | 1.3155 | 4.75E-11 | 1.52E-09 | Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1 | |
| Comp155113_c1 | 6.4166 | 4.35E-06 | 8.08E-05 | Transcription factor bHLH100 OS = Arabidopsis thaliana GN = BHLH100 PE = 2 SV = 1 | |
| Comp156748_c0 | 1.7023 | 1.19E-10 | 3.70E-09 | Transcription factor bHLH49 OS = Arabidopsis thaliana GN = BHLH49 PE = 2 SV = 1 | |
| Comp157296_c0 | 1.6831 | 3.05E-47 | 3.96E-45 | Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1 | |
| Comp158090_c0 | 2.7887 | 1.36E-05 | 0.000235 | Transcription factor bHLH87 OS = Arabidopsis thaliana GN = BHLH87 PE = 2 SV = 1 | |
| Comp161381_c0 | 1.7318 | 4.00E-18 | 1.99E-16 | Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1 | |
| R3 | Comp151458_c0 | 5.1734 | 1.12E-145 | 6.96E-143 | Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1 |
| Comp152649_c0 | 3.9009 | 2.63E-10 | 1.03E-08 | Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1 | |
| Comp155000_c0 | 1.8218 | 1.13E-32 | 1.28E-30 | Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1 | |
| Comp158090_c0 | 2.3542 | 8.95E-05 | 0.0017648 | Transcription factor bHLH87 OS = Arabidopsis thaliana GN = BHLH87 PE = 2 SV = 1 | |
| Comp157296_c0 | 1.3594 | 8.99E-42 | 1.32E-39 | Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1 | |
| R4 | Comp144776_c0 | 4.2436 | 2.26E-08 | 1.20E-06 | putative HLH DNA-binding domain superfamily protein [Zea mays] |
| Comp152402_c0 | 2.1585 | 9.87E-18 | 1.17E-15 | Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1 | |
| Comp161008_c0 | 1.0341 | 2.20E-09 | 1.31E-07 | Transcription factor bHLH62 OS = Arabidopsis thaliana GN = BHLH62 PE = 2 SV = 1 | |
| S1 | Comp152402_c0 | 5.684 | 2.77E-50 | 1.01E-47 | Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1 |
| Comp152681_c0 | 2.2077 | 2.22E-24 | 3.30E-22 | Transcription factor bHLH113 OS = Arabidopsis thaliana GN = BHLH113 PE = 2 SV = 1 | |
| Comp153254_c1 | 2.4778 | 2.26E-07 | 8.65E-06 | Transcription factor bHLH35 OS = Arabidopsis thaliana GN = BHLH35 PE = 2 SV = 1 | |
| Comp161381_c0 | 1.8375 | 5.99E-18 | 6.18E-16 | Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1 | |
| S2 | Comp150821_c0 | 1.9992 | 1.56E-10 | 3.08E-09 | Transcription factor ILR3 OS = Arabidopsis thaliana GN = ILR3 PE = 1 SV = 1 |
| Comp151458_c0 | 6.2918 | 2.52E-122 | 5.90E-120 | Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1 | |
| Comp152649_c0 | 4.7211 | 7.00E-29 | 3.47E-27 | Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1 | |
| Comp153254_c1 | 2.4642 | 3.92E-07 | 5.64E-06 | Transcription factor bHLH35 OS = Arabidopsis thaliana GN = BHLH35 PE = 2 SV = 1 | |
| Comp155000_c0 | 2.3306 | 1.24E-21 | 4.69E-20 | Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1 | |
| Comp155113_c1 | 4.9895 | 0.0001235 | 0.001231 | Transcription factor bHLH100 OS = Arabidopsis thaliana GN = BHLH100 PE = 2 SV = 1 | |
| Comp156748_c0 | 2.3306 | 7.63E-17 | 2.27E-15 | Transcription factor bHLH49 OS = Arabidopsis thaliana GN = BHLH49 PE = 2 SV = 1 | |
| Comp157296_c0 | 1.5876 | 1.65E-21 | 6.21E-20 | Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1 | |
| Comp158090_c0 | 3.0266 | 1.90E-06 | 2.52E-05 | Transcription factor bHLH87 OS = Arabidopsis thaliana GN = BHLH87 PE = 2 SV = 1 | |
| Comp161381_c0 | 1.1771 | 2.24E-05 | 0.0002535 | Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1 | |
| S3 | Comp152402_c0 | 3.652 | 1.49E-16 | 2.14E-14 | Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1 |
| Comp161381_c0 | 1.7077 | 1.87E-31 | 6.20E-29 | Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1 | |
| S4 | Comp152681_c0 | 1.6033 | 3.85E-16 | 7.24E-14 | Transcription factor bHLH113 OS = Arabidopsis thaliana GN = BHLH113 PE = 2 SV = 1 |
| Comp161381_c0 | 1.1696 | 6.53E-10 | 6.46E-08 | Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1 |