Table 1.
Representation analysis using TAIR ontology for up-regulated genes in the hes seed 80 HAP
| Terma | Observed frequency (%) | Expected frequency (%) | P-value |
|---|---|---|---|
| response to osmotic stress | 1.70 | 0.70 | 1.26E-05 |
| response to salt stress | 1.50 | 0.60 | 0.00029 |
| response to jasmonic acid stimulus | 1.20 | 0.50 | 0.00149 |
| secondary metabolic process | 2.30 | 1.30 | 0.00378 |
| response to abiotic stimulus | 4.50 | 3.10 | 0.00568 |
| cytidine catabolic process | 0.20 | 0.00 | 0.00716 |
| nucleoside catabolic process | 0.20 | 0.00 | 0.00716 |
| cytidine deamination | 0.20 | 0.00 | 0.00716 |
| ribonucleoside catabolic process | 0.20 | 0.00 | 0.00716 |
| cytidine metabolic process | 0.20 | 0.00 | 0.00716 |
| pyrimidine ribonucleoside catabolic process | 0.20 | 0.00 | 0.00716 |
| pyrimidine nucleoside catabolic process | 0.20 | 0.00 | 0.00716 |
| inorganic anion transport | 0.50 | 0.10 | 0.01377 |
| anion transport | 0.60 | 0.20 | 0.01931 |
| pyrimidine ribonucleoside metabolic process | 0.20 | 0.00 | 0.01981 |
| pyrimidine nucleoside metabolic process | 0.20 | 0.00 | 0.04563 |
| abscisic acid mediated signalling | 0.60 | 0.20 | 0.04738 |
a Over-represented groups associated with developmental stages were removed (see Supplementary Table S5 for complete list).