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Effect of antibiotics and FMT on the microbial community of C. difficile-infected mice. NMDS ordination was calculated from the Yue and Clayton dissimilarity metric (θYC) on OTU at a 97% cutoff. Biplot values of the OTU driving the NMDS ordination were derived using a cutoff of P < 0.001 for at least one axis, a total sequence abundance of >100,000 and a length of >0.77.
