Table 1. List of Differentially Expressed Genes in the ami-ppd Line.
| AGI Codes | Annotation | LinFC | P Value |
|---|---|---|---|
| AT2G12210 | Transposable element gene | 3.76 | 0.0040 |
| AT5G54510 | DFL1, DWARF IN LIGHT1 | 3.00 | 0.0020 |
| AT2G42840 | PDF1, PROTODERMAL FACTOR1 | 2.78 | 0.0003 |
| AT3G05600 | Epoxide hydrolase, putative | 2.45 | 0.0020 |
| AT5G49700 | DNA binding protein-related | 2.42 | 0.0001 |
| AT1G14900 | HMGA (HIGH MOBILITY GROUP A) | 2.38 | 0.0003 |
| AT2G37030 | SAUR46, SAUR-like auxin-responsive protein family | 2.31 | 0.0040 |
| AT5G62280 | Unknown protein | 2.18 | 0.0080 |
| AT1G23870 | ATTPS9, TREHALOSE-6-PHOSPHATE SYNTHASE S9 | 2.06 | 0.0070 |
| AT5G20740 | Invertase/pectin methylesterase inhibitor family protein | 2.04 | 0.0070 |
| AT3G04290 | LTL1 (LI-TOLERANT LIPASE1) | 1.97 | 0.0080 |
| AT1G27030 | Unknown protein | 1.96 | 0.0050 |
| AT3G09260 | PYK10 | 1.89 | 0.0020 |
| AT3G54990 | SMZ,SCHLAFMUTZE | 1.88 | 0.0070 |
| AT5G20630 | GER3, GERMIN 3 | 1.84 | 0.0280 |
| AT4G34250 | KCS16, 3-KETOACYL-COA SYNTHASE16 | 1.78 | 0.0070 |
| AT1G52000 | Jacalin lectin family protein | 1.77 | 0.0180 |
| AT5G67110 | ALC, ALCATRAZ | 1.75 | 0.0360 |
| AT5G04530 | KCS19, 3-KETOACYL-COA SYNTHASE19 | 1.73 | 0.0020 |
| AT5G53210 | SPCH, SPEECHLESS | 1.73 | 0.0200 |
| AT3G54400 | Aspartyl protease family protein | 1.72 | 0.0370 |
| AT5G04190 | PKS4,phytochrome kinase substrate 4 | 1.70 | 0.0390 |
| AT3G08770 | LTP6; lipid binding | 1.66 | 0.0250 |
| AT3G50570 | Hydroxyproline-rich glycoprotein family protein | 1.62 | 0.0050 |
| AT4G29020 | Glycine-rich protein | 1.61 | 0.0040 |
| AT1G06080 | ADS1, DELTA 9 DESATURASE1 | 1.61 | 0.0460 |
| AT3G12700 | Aspartyl protease family protein | 1.61 | 0.0090 |
| AT3G50070 | CYCD3;3, CYCLIN D3;3 | 1.60 | 0.0090 |
| AT2G23170 | GH3.3; indole-3-acetic acid amido synthetase | 1.56 | 0.0090 |
| AT1G26210 | Unknown protein | 1.55 | 0.0070 |
| AT2G37300 | Unknown protein | 1.53 | 0.0070 |
| AT5G43020 | Leucine-rich repeat transmembrane protein kinase, putative | 1.43 | 0.0290 |
| AT5G51750 | ATSBT1.3, ARABIDOPSIS THALIANA SUBTILASE 1.3 | 1.39 | 0.0350 |
| AT2G37630 | AS1, ASYMMETRIC LEAVES1 | 1.38 | 0.0250 |
| AT5G59540 | Oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1.38 | 0.0490 |
| AT5G67260 | CYCD3;2, CYCLIN D3;2 | 1.34 | 0.0310 |
| AT5G56870 | BGAL4, β-galactosidase 4 | −1.33 | 0.0390 |
| AT1G70810 | C2 domain-containing protein | −1.46 | 0.0120 |
| AT2G15042 | Protein binding | −1.48 | 0.0300 |
| AT4G00880 | SAUR31 | −1.50 | 0.0460 |
| AT1G76240 | Unknown protein | −1.57 | 0.0200 |
| AT3G63110 | ATIPT3, Arabidopsis thaliana isopentenyltransferase 3 | −1.62 | 0.0460 |
| AT1G71140 | MATE efflux family protein | −1.69 | 0.0310 |
| AT4G14720 | PPD2 | −1.70 | 0.0200 |
| AT1G32450 | NRT1.5, NITRATE TRANSPORTER 1.5 | −1.79 | 0.0030 |
| AT5G09220 | AAP2, AMINO ACID PERMEASE2 | −1.91 | 0.0050 |
| AT3G04720 | PR4, PATHOGENESIS-RELATED4 | −1.97 | 0.0460 |
| AT2G32160 | Unknown protein | −2.14 | 0.0450 |
| AT1G19960 | Unknown protein | −2.16 | 0.0470 |
| AT1G67865 | Unknown protein | −2.17 | 0.0230 |
Wild-type and ami-ppd plants were grown for 13 DAS, and the first pair of leaves was harvested for RNA extraction and genome transcript profiling. LinFC, linear fold change.