Figure 2.

Genomic Features of P. patens Small RNA-Producing Loci.

(A) Percentages of small RNA-producing loci that overlap various genomic features: % overlap = (# small RNA loci overlapping with one or more of the indicated genomic feature/# total small RNA loci) * 100.

(B) Percentages of regions of dense DNA methylation (5-mC) in three different contexts (CG, CHG, and CHH) relative to different genomic features.

(C) Heat map showing log₂ (observed overlapped bases/expected overlapped bases) for each of the pairwise comparisons shown. Small RNA loci versus various genomic features are indicated. Cell values are shown in bold text.

(D) Heat map showing log₂ (observed overlapped bases/expected overlapped bases) for each of the pairwise comparisons shown. Regions of dense DNA methylation (5-mC) in three different contexts (CG, CHG, and CHH) versus various genomic features are indicated. Repeat masked: repeats of various types as annotated by the Joint Genome Initiative genome annotation.