Table 3. Summary of sRNAs Identified by High-Throughput Sequencing.
sRNA Population | Mocka | PSTVd-Ib | PSTVd-Mc | ||||||
---|---|---|---|---|---|---|---|---|---|
sRNAd | PSTVd-I sRNAe | PSTVd-M sRNAf | sRNAd | vd-sRNA | % vd-sRNAg | sRNAd | vd-sRNA | % vd-sRNA | |
21 nucleotides | 585,563 | 39 | 41 | 700,131 | 160,598 | 22.9 | 560,960 | 29,273 | 5.2 |
22 nucleotides | 548,009 | 57 | 58 | 839,033 | 288,180 | 34.3 | 560,365 | 66,438 | 11.8 |
23 nucleotides | 721,920 | 2 | 2 | 622,373 | 13,218 | 2.1 | 791,306 | 3,121 | 0.4 |
24 nucleotides | 2,424,949 | 8 | 7 | 2,155,006 | 26,150 | 1.2 | 2,627,483 | 5,101 | 0.2 |
21 to 24 nucleotides | 4,280,441 | 106 | 108 | 4,316,543 | 488,146 | 11.3 | 4,540,114 | 103,933 | 2.3 |
sRNA isolated from a mock-inoculated plant.
sRNA isolated from a PSTVd-I-inoculated plant.
sRNA isolated from a PSTVd-M-inoculated plant.
Total number of individual sRNAs.
sRNAs identical to the genomic (+) and antigenomic (−) strands of PSTVd-I .
sRNA identical to the genomic (+) and antigenomic (−) strands of PSTVd-M.