Table 4. List of amplicons that consistently failed in >10% of samples to reach 250X coverage.
Samples for which amplicon depth was < 250X | |||||
---|---|---|---|---|---|
Amplicon_ID | Gene | Exon | GC content (%) | n | % |
CHP2_NOTCH1_1 | NOTCH1 | 26 | 70.9 | 38 | 42.7 |
CHP2_STK11_4 | STK11 | 6 | 60.4 | 35 | 39.3 |
CHP2_STK11_3 | STK11 | 4–5 | 75.6 | 29 | 32.6 |
CHP2_FGFR3_2 | FGFR3 | 9 | 67.9 | 21 | 23.6 |
CHP2_FGFR3_1 | FGFR3 | 7 | 73.5 | 16 | 18.0 |
CHP2_FGFR3_5 | FGFR3 | 18 | 72.8 | 14 | 15.7 |
CHP2_FGFR3_3 | FGFR3 | 14 | 66 | 9 | 10.1 |