Table 5. Identification of SNPs in genes that are members of Zn and/or Fe transport-related families, followed by the length of the CDS, genomic length, number of SNPs between Albion and Voyager, whether those SNPs validated via PCR and if the SNPs resulted in an amino acid change.
| P. vulgaris genome ID | Family | CDS Length | Genomic Length | SNPs in CDS | Chr | SNPs confirmed a | AA change |
|---|---|---|---|---|---|---|---|
| Phvul002G288300 | HMA | 2,982 | 5,648 | 5 | 2 | Syn, Syn, Syn, Syn, Phe/Ser | |
| Phvul002G19000 | HMA | 2,958 | 4,150 | 6 | 2 | * | Syn, Syn, Syn, Syn, Syn, Syn |
| Phvul.002G208800 | HMA | 2,835 | 24,712 | 1 | 2 | Ala/Thr | |
| Phvul.003G047300 | HMA | 3,564 | 9,174 | 4 | 3 | Syn, Syn, Syn, Syn | |
| Phvul.002G014300 | NRAMP | 1,524 | 2,952 | 4 | 2 | Val/Leu, Syn, Syn, Syn | |
| Phvul.008G157800 | YSL | 1,908 | 2,751 | 3 | 8 | * | Met/Ile, Syn, Syn |
| Phvul.001G081600 | YSL | 2,031 | 6,538 | 2 | 1 | Gly/Ser, Syn | |
| Phvul.011G173100 | ZIF | 1,470 | 5,330 | 10 | 11 | * | Gln/Leu, Asp/Glu, Arg/Pro, Ala/Val, Syn, Syn, Syn, Thr/Ile, Val/Ile, Gln/His |
| Phvul.011G189500 | ZIF | 1,470 | 4,785 | 5 | 11 | Syn, Ile/Val, Syn, Syn, Syn | |
| Phvul.008G221200 | Ferritin | 891 | 2,550 | 1 | 8 | Glu/Lys |
a: * indicates SNPs were confirmed by PCR amplification and sequencing.