Table 1. Optional Bioconductor chip reading libraries.
Library | Chip Type | Run Local? |
---|---|---|
affy | Affymetrix 3'-biased | Yes |
gcrma | Affymetrix 3'-biased | Yes |
affyPLM | Affymetrix 3'-biased | Yes |
xps | Affymetrix 3'-biased | No |
oligo | Affymetrix Exon ST | Yes |
exonmap | Affymetrix Exon ST | No |
xps | Affymetrix Exon ST | No |
oligo | Affymetrix Gene ST | Yes |
xps | Affymetrix Gene ST | No |
oligo | Affymetrix SNP | Yes |
oligo | Affymetrix Tilling | Yes |
oligo | Nimblegen | Yes |
lumi | Illumina | No |
beadarray | Illumina | No |