. 2015 Jun 27;34(10):1761–1771. doi: 10.1007/s00299-015-1822-9

Table 1.

Summary for RNA-Seq reads mapping

Sample	# Trimmed reads	Mapped reads^a	% Mapped reads^b	Unique reads^c	% Unique reads^d
NN_Zheng58 rep1	11,711,873	9,654,313	82.4	8,015,675	83.0
NN_Zheng58 rep2	12,024,837	9,679,882	80.5	8,249,117	85.2
LN_Zheng58 rep1	10,026,796	8,203,604	81.8	7,027,655	85.7
LN_Zheng58 rep2	11,961,259	7,747,455	64.8	5,801,233	74.9
NN_Chang7-2 rep1	7,524,720	6,731,286	89.5	5,394,971	80.1
NN_Chang7-2 rep2	9,888,498	7,761,912	78.5	5,929,391	76.4
LN_Chang7-2 rep1	11,991,698	10,241,108	85.4	8,840,129	86.3
LN_Chang7-2 rep2	7,137,723	6,314,603	88.5	5,546,868	87.8
Average	10,283,426	8,291,770	81.4	6,850,630	82.4

^aNumber of reads that were mapped to the B73 genome

^b% of reads that were mapped to the B73 genome out of the total number of trimmed reads

^cNumber of uniquely mapped reads out of the total number of mapped reads

^d% of uniquely mapped reads out of the total number of mapped reads