Figure 10.
Neighbor-joining phylogenetic tree of the TerL (Terminase Large subunit—for Caudovirales including Myoviridae, Podoviridae, and Siphoviridae) (pfam03237) of Long Beach virome. Long Beach-1 virome library was used as a representative metagenome profile for the Long Beach site. Sequence homologs (E-value < 10−3 using blastX) to the TerL marker sequences were obtained from the virome library, assembled at 98% identity in 35 bp using Cap3 and used to draw phylogenetic tree alongside reference sequences taken from the protein family (PFAM) database. Sequences for which the best blast hit did not correspond to the TerL marker were excluded from analysis. Bootstrap values of ≥80 are highlighted with black lines.