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. Author manuscript; available in PMC: 2016 Apr 14.
Published in final edited form as: J Chem Theory Comput. 2015 Apr 1;11(4):1399–1409. doi: 10.1021/ct501116v

Table 2.

Relative Errors for Solvent Reconstructions from the Different pRDF Atom Sets

CNO-pRDFs CNOS-PRDFs side chain-pRDFs
Reconstructions from Protein Averaged Distributions
relative error within 4–6 Å shell side chain 0.599% 0.574% 0.427%
backbone 0.841% 0.847% 0.888%
heavy atom 0.53% 0.51% 0.36%
total relative error side chain 4.43% 4.44% 4.41%
backbone 6.44% 6.39% 6.43%
heavy atom 4.27% 4.27% 4.34%
RMSD side chain 0.38% 0.37% 0.39%
backbone 0.51% 0.51% 0.52%
heavy atom 0.71% 0.71% 0.73%
Reconstructions from Small-Molecule Distributions
relative error within 4–6 Å shell side chain 1.37% 1.34% 0.444%
backbone 1.05% 1.01% 0.958%
heavy atom 1.3% 1.3% 0.39%
total relative error side chain 5.76% 5.62% 4.42%
backbone 6.65% 6.48% 6.05%
heavy atom 5.42% 5.29% 4.19%
RMSD side chain 0.37% 0.37% 0.37%
backbone 0.50% 0.50% 0.50%
heavy atom 0.70% 0.70% 0.71%