Table 2.
The number of proteins and the number of annotations in the train and test sets with respect to the three setups for human
| Training set | Test set | ||||
|---|---|---|---|---|---|
| Set. | Proteins | Annots. | Proteins | Annots. | |
| F | CV | 4532 | 8467 | 1133 | 2116 |
| NA | 4305 | 6898 | 799 | 1343 | |
| NP | 4305 | 6898 | 1344 | 2174 | |
| P | CV | 7533 | 31794 | 1883 | 7948 |
| NA | 5824 | 12196 | 3301 | 13192 | |
| NP | 5824 | 12196 | 3574 | 12973 | |
| C | CV | 8440 | 19196 | 2110 | 4799 |
| NA | 5082 | 8185 | 2966 | 5511 | |
| NP | 5082 | 8185 | 5468 | 10200 | |
F, P and C represent molecular function, biological process and cellular component, respectively. For the CV setup, numbers represent average values computed across the training and test folds (5-fold CV)