Table 2.
Single nucleotide polymorphisms (SNPs) in F. psychrophilum strains used in our experiments
| NONSYNONYMOUS SNPs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| SYNONYMOUS SNPs | CW | CN | CR | TW | TN | TR | ERGO | B17 | |
| CW | n.a. | 5 | 8 | 85 | 113 | 123 | 19 | 14 | |
| CN | 32 | n.a. | 3 | 105 | 141 | 117 | 25 | N.D. | |
| CR | 34 | 33 | n.a. | 113 | 158 | 108 | 28 | N.D. | |
| TW | 161 | 170 | 174 | n.a. | 126 | 174 | 100 | N.D. | |
| TN | 233 | 142 | 146 | 177 | n.a. | 48 | 102 | N.D. | |
| TR | 278 | 287 | 291 | 257 | 180 | n.a. | 132 | N.D. | |
| ERGO | 37 | 75 | 78 | 206 | 208 | 238 | n.a. | 33 | |
| B17 | 45 | N.D. | N.D. | N.D. | N.D. | N.D. | 50 | n.a. | |
CW wild type CSF 259–93, CN CSF 259–93 passaged without Rif, CR CSF 259–93 passaged with Rif, TW wild type THC 02–90, TN THC 02–90 passaged without Rif, THC 02–90 passaged with Rif, B17 – CSF 259-93B.17
N.D. not determined due to these genomes being sequenced at different times and by different methods
n.a. = not applicable