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. 2015 Jul 1;35(26):9648–9665. doi: 10.1523/JNEUROSCI.3125-14.2015

Table 1.

Statistical analysis of behavioral studiesa

Parameter Comparison Results
Open field (WT, N = 23; Shank3WT/G, N = 19; Shank3G/G, N = 19)
    Time in center Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.01, p = 0.90; main effect of genotype: F(2,55) = 1.15, p = 0.32; sex × genotype interaction: F(2,55) = 0.30, p = 0.73
    Frequency in center Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.07, p = 0.78; main effect of genotype: F(2,55) = 1.11, p = 0.33; sex × genotype interaction: F(2,55) = 0.67, p = 0.51
    Time in periphery Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.34, p = 0.55; main effect of genotype: F(2,55) = 0.26, p = 0.76; sex × genotype interaction: F(2,55) = 1.41, p = 0.25
    Frequency in periphery Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.80, p = 0.37; main effect of genotype: F(2,55) = 1.43, p = 0.24; sex × genotype interaction: F(2,55) = 2.47, p = 0.09
    Time in center/time in periphery Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.06, p = 0.79; main effect of genotype: F(2,55) = 1.20, p = 0.30; sex × genotype interaction: F(2,55) = 0.65, p = 0.52
    Distance traveled Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.01, p = 0.89; main effect of genotype: F(2,55) = 2.56, p = 0.08; sex × genotype interaction: F(2,55) = 2.75, p = 0.07
Tukey HSD: WT versus Shank3WT/G: p = 0.96; WT versus Shank3G/G: p < 0.05; Shank3WT/G versus Shank3G/G: p = 0.06
    Velocity Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.004, p = 0.94; main effect of genotype: F(2,55) = 2.35, p = 0.10; sex × genotype interaction: F(2,55) = 2.90, p = 0.06
Tukey HSD: WT versus Shank3WT/G: p = 0.96; WT versus Shank3G/G: p < 0.05; Shank3WT/G versus Shank3G/G: p = 0.07
Dark/light box (WT, N = 23; Shank3WT/G, N = 19, Shank3G/G, N = 19)
    Total activity Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.15, p = 0.69; main effect of genotype: F(2,55) = 2.96, p = 0.059; sex × genotype interaction: F(2,55) = 1.48, p = 0.23
Tukey HSD: WT versus Shank3WT/G: p = 0.99; WT versus Shank3G/G: p < 0.05; Shank3WT/G versus Shank3G/G: p < 0.05
    Time in light side Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.06, p = 0.79; main effect of genotype: F(2,55) = 0.87, p = 0.42; sex × genotype interaction: F(2,55) = 1.36, p = 0.26
    Crosses Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.20, p = 0.65; main effect of genotype: F(2,55) = 0.66, p = 0.51; sex × genotype interaction: F(2,55) = 2.12, p = 0.12
    Latency to enter light side Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.92, p = 0.33; main effect of genotype: F(2,55) = 6.66, p < 0.01; sex × genotype interaction: F(2,55) = 0.69, p = 0.50
Tukey HSD: WT versus Shank3WT/G: p = 0.38; WT versus Shank3G/G: p < 0.05; Shank3WT/G versus Shank3G/G: p < 0.001
    Time in dark side Sex, genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.06, p = 0.79; main effect of genotype: F(2,55) = 0.87, p = 0.42; sex × genotype interaction: F(2,55) = 1.36, p = 0.26
Elevated plus maze (WT, N = 23; Shank3WT/G, N = 19; Shank3G/G, N = 19)
    Distance traveled Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.03, p = 0.85; main effect of genotype: F(2,55) = 4.83, p < 0.05; sex × genotype interaction: F(2,55) = 1.79, p = 0.17
Tukey HSD: WT versus Shank3WT/G: p = 0.99; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p < 0.01
    Velocity Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.03, p = 0.85; main effect of genotype: F(2,55) = 4.83, p < 0.05; sex × genotype interaction: F(2,55) = 1.79, p = 0.17
Tukey HSD: WT versus Shank3WT/G: p = 0.99; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p < 0.01
    Time in open arms/time in both arms Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.17, p = 0.68; main effect of genotype: F(2,55) = 0.23, p = 0.79; sex × genotype interaction: F(2,55) = 0.24, p = 0.78
    Entries in open/entries in both Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 3.52, p = 0.06; main effect of genotype: F(2,55) = 0.24, p = 0.78; sex × genotype interaction: F(2,55) = 0.62, p = 0.54
Morris water maze: initial training (WT, N = 22; Shank3WT/G, N = 19; Shank3G/G, N = 18)
    Latency to reach platform Sex, genotype, and day 3-way rmANOVA; main effect of sex: F(1,53) = 0.94, p = 0.33; main effect of genotype: F(2,53) = 3.83, p < 0.05; main effect of day: F(8,424) = 38.03, p < 0.001; sex × genotype interaction: F(2,53) = 1.07, p = 0.34; sex × day interaction: F(8,424) = 0.43, p = 0.90; genotype × day interaction: F(16,424) = 0.76, p = 0.73; sex × genotype × day interaction: F(16,424) = 0.80, p = 0.67
Tukey HSD: WT versus Shank3WT/G: p = 0.30; WT versus Shank3G/G: p < 0.05; Shank3WT/G versus Shank3G/G: p = 0.49
    Distance traveled to platform Sex, genotype, and day 3-way rmANOVA; main effect of sex: F(1,53) = 1.22, p = 0.27; main effect of genotype: F(2,53) = 5.61, p < 0.01; main effect of day: F(8,424) = 144.53, p < 0.001; sex × genotype interaction: F(2,53) = 0.71, p = 0.49; sex × day interaction: F(8,424) = 0.49, p = 0.86; genotype × day interaction: F(16,424) = 5.58, p < 0.001; sex × genotype × day interaction: F(16,424) = 0.90, p = 0.56
Tukey HSD: WT versus Shank3WT/G: p = 0.88; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p < 0.05
    Thigmotaxis Sex, genotype, and day 3-way rmANOVA; main effect of sex: F(1,53) = 0.20, p = 0.65; main effect of genotype: F(2,53) = 0.99, p = 0.37; main effect of day: F(8,424) = 44.17, p < 0.001; sex × genotype interaction: F(2,53) = 0.52, p = 0.59; sex × day interaction: F(8,424) = 0.21, p = 0.98; genotype × day interaction: F(16,424) = 1.48, p = 0.10; sex × genotype × day interaction: F(16,424) = 0.69, p = 0.79
    Average swim speed Sex, genotype, and day 3-way rmANOVA; main effect of sex: F(1,53) = 0.78, p = 0.37; main effect of genotype: F(2,53) = 36.66, p < 0.001; main effect of day: F(8,424) = 34.05, p < 0.001; sex × genotype interaction: F(2,53) = 0.44, p = 0.64; sex × day interaction: F(8,424) = 0.64, p = 0.74; genotype × day interaction: F(16,424) = 9.79, p < 0.001; sex × genotype × day interaction: F(16,424) = 0.54, p = 0.92
Tukey HSD: WT versus Shank3WT/G: p < 0.001; WT versus Shank3G/G: p < 0.001 Shank3WT/G versus Shank3G/G: p < 0.05
Morris water maze: probe trial (WT, N = 22; Shank3WT/G, N = 19; Shank3G/G, N = 18)
    % time in quadrant Sex, genotype, and quadrant 3-way rmANOVA; main effect of sex: F(1,53) = 0.00000001, p = 0.99; main effect of genotype: F(2,53) = 0.00000008, p = 0.99; main effect of quadrant: F(3,159) = 20.621, p < 0.001; sex × genotype interaction: F(2,53) = 0.0000002, p = 0.99; sex × quadrant interaction: F(3,159) = 1.91, p = 0.13; genotype × quadrant interaction: F(6,159) = 0.89, p = 0.50; sex × genotype × quadrant interaction: F(6,159) = 1.20, p = 0.30
Target versus other quadrants Tukey HSD: target NW versus right NE: p < 0.001; target NW versus left SW: p < 0.001; target NW versus opposite SE: p < 0.001
Target versus other quadrants within WT Tukey HSD: target NW versus right NE: p = 0.78 target NW versus left SW: p = 0.40; target NW versus opposite SE: p < 0.05
Target versus other quadrants within Shank3WT/G Tukey HSD: target NW versus right NE: p < 0.001; target NW versus left SW: p < 0.001; target NW versus opposite SE: p < 0.001
Target versus other quadrants within Shank3G/G Tukey HSD: target NW versus right NE: p < 0.01; target NW versus left SW: p < 0.05; target NW versus opposite SE: p < 0.001
    No. of platform crossings Sex, genotype, and platform 3-way rmANOVA; main effect of sex: F(1,53) = 2.54, p = 0.11; main effect of genotype: F(2,53) = 1.56, p = 0.21; main effect of quadrant: F(3,159) = 25.05, p < 0.001; sex × genotype interaction: F(2,53) = 0.35, p = 0.70; sex × quadrant interaction: F(3,159) = 2.50, p = 0.06; genotype × quadrant interaction: F(6,159) = 1.36, p = 0.23; sex × genotype × quadrant interaction: F(6,159) = 0.72, p = 0.62
Target versus other platforms Tukey HSD: target NW versus right NE: p < 0.001; target NW versus left SW: p < 0.001; target NW versus opposite SE: p < 0.001
Target versus other platforms within WT Tukey HSD: target NW versus right NE: p = 0.06 target NW versus left SW: p = 0.37; target NW versus opposite SE: p < 0.01
Target versus other platforms within Shank3WT/G Tukey HSD: target NW versus right NE: p < 0.001; target NW versus left SW: p < 0.001; target NW versus opposite SE: p < 0.001
Target versus other platforms within Shank3G/G Tukey HSD: target NW versus right NE: p < 0.01; target NW versus left SW: p < 0.05; target NW versus opposite SE: p < 0.001
    Average swim speed Sex and genotype 2-way ANOVA; main effect of sex: F(1,53) = 0.03, p = 0.85; main effect of genotype: F(2,53) = 1.45, p = 0.24; sex × genotype interaction: F(2,53) = 0.14, p = 0.86
    % thigmotaxis Sex and genotype 2-way ANOVA; main effect of sex: F(1,53) = 0.21, p = 0.64; main effect of genotype: F(2,53) = 0.07, p = 0.93; sex × genotype interaction: F(2,53) = 1.11, p = 0.33
    Distance traveled Sex and genotype 2-way ANOVA; main effect of sex: F(1,53) = 0.02, p = 0.86; main effect of genotype: F(2,53) = 1.49, p = 0.23; sex × genotype interaction: F(2,53) = 0.13, p = 0.87
Visible water maze (WT, N = 22; Shank3WT/G, N = 19; Shank3G/G, N = 18)
    Latency to platform Sex and genotype 2-way ANOVA; main effect of sex: F(1,53) = 0.30, p = 0.58; main effect of genotype: F(2,53) = 2.87, p = 0.06; sex × genotype interaction: F(2,53) = 0.71, p = 0.49
    % thigmotaxis Sex and genotype 2-way ANOVA; main effect of sex: F(1,32) = 0.0008, p = 0.97; main effect of genotype: F(1,32) = 0.98, p = 0.32; sex × genotype: F(1,32) = 0.04, p = 0.82
    Distance traveled to platform Sex and genotype 2-way ANOVA; main effect of sex: F(1,53) = 0.02, p = 0.88; main effect of genotype: F(2,53) = 9.32, p < 0.001; sex × genotype interaction: F(2,53) = 0.81, p = 0.44
Tukey HSD: WT versus Shank3WT/G: p = 0.70; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p < 0.001
    Average swim speed Sex and genotype 2-way ANOVA; main effect of sex: F(1,53) = 0.12, p = 0.72; main effect of genotype: F(2,53) = 5.12, p < 0.01; sex × genotype interaction: F(2,53) = 0.66, p = 0.51
Tukey HSD: WT versus Shank3WT/G: p = 0.10; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p = 0.52
Nesting behavior (WT, N = 23; Shank3WT/G, N = 19; Shank3G/G, N = 19)
    Increase in nest height Sex, genotype, and time 3-way rmANOVA; main effect of sex: F(1,55) = 0.114, p = 0.73; main effect of genotype: F(2,55) = 7.19, p < 0.01; main effect of time: F(2,110) = 21.03, p < 0.001; sex × genotype interaction: F(2,55) = 2.18, p = 0.12; sex × time interaction: F(2,110) = 0.39, p = 0.67; genotype × time interaction: F(4,110) = 1.07, p = 0.37; sex × genotype × time interaction: F(4,110) = 0.85, p = 0.49
Tukey HSD: WT versus Shank3WT/G: p = 0.37; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p = 0.24
    Increase in nest width Sex, genotype, and time 3-way rmANOVA; main effect of sex: F(1,55) = 0.71, p = 0.40; main effect of genotype: F(2,55) = 4.60, p < 0.05; main effect of time: F(2,110) = 23.64, p < 0.001; sex × genotype interaction: F(2,55) = 1.62, p = 0.20; sex × time interaction: F(2,110) = 1.73, p = 0.18; genotype × time interaction: F(4,110) = 0.71, p = 0.58; sex × genotype × time interaction: F(4,110) = 0.18, p = 0.94
Tukey HSD: WT versus Shank3WT/G: p = 0.77; WT versus Shank3G/G: p < 0.05; Shank3WT/G versus Shank3G/G: p = 0.10
Three choice interaction test: baseline (WT, N = 19; Shank3WT/G, N = 15; Shank3G/G, N = 15)
    Distance traveled Sex and genotype 2-way ANOVA: main effect of sex: F(1,43) = 0.34, p = 0.55; main effect of genotype: F(2,43) = 6.85, p < 0.01; sex × genotype interaction: F(2,43) = 0.24, p = 0.78
Tukey HSD: WT versus Shank3WT/G: p = 0.99; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p < 0.01
    Velocity Sex and genotype 2-way ANOVA: main effect of sex: F(1,43) = 0.0007, p = 0.97; main effect of genotype: F(2,43) = 6.44, p < 0.01; sex × genotype interaction: F(2,43) = 0.26, p = 0.76
Tukey HSD: WT versus Shank3WT/G: p = 0.99; WT versus Shank3G/G: p < 0.01; Shank3WT/G versus Shank3G/G: p < 0.05
    Time spent sniffing Sex, genotype, and interaction target (front vs back) 3-way rmANOVA: main effect of sex: F(1,43) = 0.0001, p = 0.99; main effect of genotype: F(2,43) = 1.37, p = 0.26; main effect of target: F(1,43) = 1.28, p = 0.26; sex × genotype interaction: F(2,43) = 0.004, p = 0.99; sex × target interaction: F(1,43) = 0.14, p = 0.70; genotype × target interaction: F(2,43) = 0.50, p = 0.60; sex × genotype × target interaction: F(2,43) = 0.16, p = 0.84
Three choice interaction test: social preference (WT, N = 19; Shank3WT/G, N = 15; Shank3G/G, N = 15)
    Distance traveled Sex and genotype 2-way ANOVA: main effect of sex: F(1,43) = 4.59, p < 0.05; main effect of genotype: F(2,43) = 1.85; p = 0.16; sex × genotype interaction: F(2,43) = 1.25, p = 0.29
    Velocity Sex and genotype 2-way ANOVA: main effect of sex: F(1,43) = 3.30, p = 0.07; main effect of genotype: F(2,43) = 1.60; p = 0.21; sex × genotype interaction: F(2,43) = 1.46, p = 0.24
    Time spent sniffing Sex, genotype, and interaction target (inanimate vs social) 3-way rmANOVA: main effect of sex: F(1,43) = 0.001, p = 0.96; main effect of genotype: F(2,43) = 0.144, p = 0.86; main effect of target: F(1,43) = 6.01, p < 0.05; sex × genotype interaction: F(2,43) = 0.46, p = 0.62; sex × target interaction: F(1,43) = 0.06, p = 0.79; genotype × target interaction: F(2,43) = 0.02, p = 0.97; sex × genotype × target interaction: F(2,43) = 2.25, p = 0.11
Effect of target (inanimate vs social) within each genotype Tukey HSD: WT: p = 0.60; Shank3WT/G: p = 0.77; Shank3G/G: p = 0.80
Three choice interaction test: social novelty (WT, N = 19; Shank3WT/G, N = 15; Shank3G/G, N = 15)
    Distance traveled Sex and genotype 2-way ANOVA: main effect of sex: F(1,43) = 4.59, p < 0.05; main effect of genotype: F(2,43) = 1.85; p = 0.16; sex × genotype interaction: F(2,43) = 1.25, p = 0.29
    Velocity Sex and genotype 2-way ANOVA: main effect of sex: F(1,43) = 3.30, p = 0.07; main effect of genotype: F(2,43) = 1.60; p = 0.21; sex × genotype interaction: F(2,43) = 1.46, p = 0.24
    Time spent sniffing Genotype and interaction target (familiar vs stranger) 3-way rmANOVA: main effect of sex: F(1,43) = 0.257, p = 0.61; main effect of genotype: F(2,43) = 0.07, p = 0.93; main effect of target: F(1,43) = 4.52, p < 0.05; sex × genotype interaction: F(2,43) = 0.26, p = 0.76; sex × target interaction: F(1,43) = 1.88, p = 0.17; genotype × target interaction: F(2,43) = 31, p = 0.73; sex × genotype × target interaction: F(2,43) = 0.06, p = 0.93
Effect of target (familiar vs novel) within each genotype Tukey HSD: WT: p = 0.91; Shank3WT/G: p = 0.48; Shank3G/G: p = 0.92
Locomotor habituation (WT, N = 23; Shank3WT/G, N = 19; Shank3G/G, N = 19)
    Total beam breaks Sex, genotype, and bin 3-way rmANOVA; main effect of sex: F(1,55) = 0.20, p = 0.65; main effect of genotype: F(2,55) = 0.38, p = 0.68; main effect of trial: F(23,1265) = 105.79, p < 0.001; sex × genotype interaction: F(2,55) = 2.62, p = 0.08; sex × trial interaction: F(23,1265) = 0.94, p = 0.53; genotype × trial: F(46,1265) = 1.72, p < 0.01; sex × genotype × trial interaction: F(46,1265) = 1.21, p = 0.16
Tukey HSD: WT versus Shank3WT/G: p = 0.97; WT versus Shank3G/G: p = 0.49; Shank3WT/G versus Shank3G/G: p = 0.40
    First bin only Genotype and sex 2-way ANOVA; main effect of sex: F(1,55) = 0.38, p = 0.53; main effect of genotype: F(2,55) = 10.85, p < 0.001; sex × genotype interaction: F(2,55) = 0.50, p = 0.60
Tukey HSD: WT versus Shank3WT/G: p = 0.96; WT versus Shank3G/G: p < 0.001; Shank3WT/G versus Shank3G/G: p < 0.001
    Stereotypy beam breaks Sex, genotype, and bin 3-way rmANOVA; main effect of sex: F(1,55) = 5.95, p < 0.05; main effect of genotype: F(2,55) = 1.18, p = 0.31; main effect of trial: F(23,1265) = 50.59, p < 0.001; sex × genotype interaction: F(2,55) = 3.78, p < 0.05; sex × trial interaction: F(23,1265) = 0.70, p = 0.84; genotype × trial: F(46,1265) = 0.84, p = 0.76; sex × genotype × trial interaction: F(46,1265) = 1.30, p = 0.08
    Ambulatory beam breaks Sex, genotype, and bin 3-way rmANOVA; main effect of sex: F(1,55) = 0.03, p = 0.84; main effect of genotype: F(2,55) = 1.21, p = 0.30; main effect of trial: F(23,1265) = 101.88, p < 0.001; sex × genotype interaction: F(2,55) = 2.03, p = 0.14; sex × trial interaction: F(23,1265) = 1.03, p = 0.41; genotype × trial: F(46,1265) = 2.16, p < 0.001; sex × genotype × trial interaction: F(46,1265) = 0.99, p = 0.47
Rotarod (WT, N = 23; Shank3WT/G, N = 19; Shank3G/G, N = 19)
    Time to fall off Sex, genotype, and trial 3-way rmANOVA; main effect of sex: F(1,55) = 12.36, p < 0.001; main effect of genotype: F(2,55) = 20.37, p < 0.001; main effect of trial: F(7,385) = 23.36, p < 0.001; sex × genotype interaction: F(2,55) = 3.73, p < 0.05; sex × trial interaction: F(7,238) = 0.51, p = 0.82; genotype × trial: F(14,385) = 1.25, p = 0.27; sex × genotype × trial interaction: F(14,385) = 0.60, p = 0.86
Tukey HSD: WT versus Shank3WT/G: p = 0.10; WT versus Shank3G/G: p < 0.001; Shank3WT/G versus Shank3G/G: p < 0.01
Marble burying (WT, N = 23; Shank3WT/G, N = 19; Shank3G/G, N = 19)
    No. of marbles buried Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 1.31, p = 0.25; main effect of genotype: F(2,55) = 9.80, p < 0.001; sex × genotype interaction: F(2,55) = 0.29, p = 0.74
Tukey HSD: WT versus Shank3WT/G: p = 0.10; WT versus Shank3G/G: p < 0.001; Shank3WT/G versus Shank3G/G: p = 0.06
Grooming (WT, N = 23; Shank3WT/G, N = 19; Shank3G/G, N = 19)
    Time spent grooming Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.53, p = 0.46; main effect of genotype: F(2,55) = 0.97, p = 0.38; sex × genotype interaction: F(2,55) = 1.27, p = 0.28
    No. of bouts Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.004, p = 0.94; main effect of genotype: F(2,55) = 0.73, p = 0.48; sex × genotype interaction: F(2,55) = 0.09, p = 0.91
    Time per bout Sex and genotype 2-way ANOVA; main effect of sex: F(1,55) = 0.12, p = 0.72; main effect of genotype: F(2,55) = 0.69, p = 0.50; sex × genotype interaction: F(2,55) = 1.25, p = 0.29

a WT, Wild-type; rmANOVA, ANOVA (between-subjects factors are generally sex and genotype) with repeated measures (day, time, or trial); F(x, y), F ratio statistic used to determine whether the variances in two independent samples are equal; x, y, degrees of freedom (df), a measure of the number of independent pieces of information on which the precision of a parameter estimate is based. × = number of groups − 1; y = number of animals per group − 1, multiplied by the number of groups.