Table 7. The top 10 unigenes that down-regulated in RE compared with PE.
| ID | Annotated gene | Length | PE (RPKM) | RE (RPKM) | log2 (RE/PE) | P-value |
|---|---|---|---|---|---|---|
| comp43544_c1_seq6 | MYH11 | 1982 | 255.96 | 13.18 | −4.28 | 2.17E-49 |
| comp43544_c1_seq15 | MYH11 | 6602 | 187.12 | 9.03 | −4.37 | 6.39E-37 |
| comp43544_c1_seq3 | MYH11 | 6620 | 183.74 | 8.62 | −4.41 | 1.99E-36 |
| comp36167_c0_seq5 | / | 1147 | 124.63 | 5.74 | −4.44 | 2.63E-25 |
| comp43563_c1_seq13 | MYH11 | 2176 | 98.86 | 5.05 | −4.29 | 4.04E-20 |
| comp24892_c0_seq2 | Neuronatin | 1298 | 42.31 | 1.06 | −5.32 | 4.01E-10 |
| comp37477_c0_seq1 | PTN | 1710 | 44.25 | 2.10 | −4.39 | 6.42E-10 |
| comp43151_c1_seq1 | / | 859 | 31.17 | 0.12 | −8.04 | 2.98E-08 |
| comp16941_c0_seq1 | / | 201 | 23.79 | 1.08 | −4.47 | 5.43E-06 |
| comp34646_c0_seq1 | / | 1933 | 22.85 | 0.82 | −4.80 | 6.20E-06 |
Note: Annotated gene displayed that the unigenes had the BLAST hits to known proteins in SWISS-PROT, and “/” meant the unigenes were not blasted to SWISS-PROT. Length represented the bases number of sequence. PE (RPKM) represented the RPKM value (Reads Per Kilobase of exon model per Million mapped reads) in the PE library generated from pre-receptive endometrium of Xinong Saanen dairy goats. RE (RPKM) represented the RPKM value in the RE library generated from receptive endometrium of Xinong Saanen dairy goats. log2 (R/P) indicated the fold change between libraries. P-Value manifested the significance of DEG between two samples.