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. 2015 Jul 23;290(36):21901–21914. doi: 10.1074/jbc.M115.670976

TABLE 1.

Primer and probe sequences

Primer name Application Sequence
pGexFOXD3 forward Cloning ATG GAT CCA TGA CCC TCT CCG GC
pGexFOXD3 reverse Cloning CTG AAT TCA TAT GAC CCT CTC CGG C
FOXDN forward Cloning CAG GAT CCA TGC GGC GCC GGA AAC GCT TCA A
FOXDN reverse Cloning CAG AAT TCC TAT TGC GCC GGC CAT TTG GCT T
FOX enhancer forward Cloning TCG AGT GTT TGC CCG CTA TTG TTA TTT TCC CCC GTT TGT TGT TTT CCC C
FOX enhancer reverse Cloning CAT GGG GGA AAA CAA CAA ACG GGG GAA AAT AAC AAT AGC GGG CAA ACA C
hGAPDH forward RT-PCR ACA TCA TCC CTG CCT CTA CT
hGAPDH reverse RT-PCR CTC TCT TCC TCT TGT GCT CTT G
CXCR4 canonical forward RT-PCR CCG AGG GCC TGA GTG CTC CAG
CXCR4 noncanical forward RT-PCR GCA GAG GAG TTA GCC AAG ATG
CXCR4 reverse RT-PCR ATC CAT TGC CCA CAA TGC CAG
CXCR4 round1 forward ChIP TTT GTT GGC TGC GGC AGC AGG
CXCR4 round1 reverse ChIP TTT TGG AGT ACG GGT ACC TCC
CXCR4 nested forward ChIP TAG CAA AGT GAC GCC GAG GG
CXCR4 nested reverse ChIP AAT GTC CTG GCC GCT TCT GC
β-Tubulin round1 forward ChIP AAA GGC CAC TAC ACA GAG GG
β-Tubulin round1 reverse ChIP TAC CAA CTG ATG GAC GGA GAG G
β-Tubulin nested forward ChIP TTG ATT CTG TCC TGG ATG TGG
β-Tubulin nested reverse ChIP TCA GAC ACT TTG GGT GAA GGC
CXCR4 WT forward EMSA CTT GAG TCC CGC CGC GCG CGG CGG CTT GCA CGC TGT TTG CAA A
CXCR4 WT reverse EMSA CTT ACG TTT GCA AAC AGC GTG CAA GCC GCC GCG CGC GGC GGG ACT
CXCR4 ΔP1 forward EMSA CTT GAT TAA TTA CGC GCG CGG CGG CTT GCA CGC TGT TTG CAA A
CXCR4 ΔP1 reverse EMSA CTT ACG TTT GCA AAC AGC GTG CAA GCC GCC GCG CGC GTA ATT AAT
CXCR4 ΔP2 forward EMSA CTT GAG TCC CGC CGC GCG CGG CGG CTT TAA TTA TGT TTG CAA A
CXCR4 ΔP2 reverse EMSA CTT ACG TTT GCA AAC ATA ATT AAA GCC GCC GCG CGC GGC GGG ACT
CXCR4 ΔF forward EMSA CTT GAG TCC CGC CGC GCG CGG CGG CTT GCA CGC GGC CGG CAA A
CXCR4 ΔF reverse EMSA CTT ACG TTT GCC GGC CGC GTG CAA GCC GCC GCG CGC GGC GGG ACT
CXCR4 ΔP1ΔP2 forward EMSA CTT GAA CTC AGC CGC GCG CGG CGG CTT GGG CGA TGT TTG CAA A
CXCR4 ΔP1ΔP2 reverse EMSA ACG TTT GCA AAC ATC GCC CAA GCC GCC GCG CGC GGC TGA GTT