TABLE 1.
Primer and probe sequences
Primer name | Application | Sequence |
---|---|---|
pGexFOXD3 forward | Cloning | ATG GAT CCA TGA CCC TCT CCG GC |
pGexFOXD3 reverse | Cloning | CTG AAT TCA TAT GAC CCT CTC CGG C |
FOXDN forward | Cloning | CAG GAT CCA TGC GGC GCC GGA AAC GCT TCA A |
FOXDN reverse | Cloning | CAG AAT TCC TAT TGC GCC GGC CAT TTG GCT T |
FOX enhancer forward | Cloning | TCG AGT GTT TGC CCG CTA TTG TTA TTT TCC CCC GTT TGT TGT TTT CCC C |
FOX enhancer reverse | Cloning | CAT GGG GGA AAA CAA CAA ACG GGG GAA AAT AAC AAT AGC GGG CAA ACA C |
hGAPDH forward | RT-PCR | ACA TCA TCC CTG CCT CTA CT |
hGAPDH reverse | RT-PCR | CTC TCT TCC TCT TGT GCT CTT G |
CXCR4 canonical forward | RT-PCR | CCG AGG GCC TGA GTG CTC CAG |
CXCR4 noncanical forward | RT-PCR | GCA GAG GAG TTA GCC AAG ATG |
CXCR4 reverse | RT-PCR | ATC CAT TGC CCA CAA TGC CAG |
CXCR4 round1 forward | ChIP | TTT GTT GGC TGC GGC AGC AGG |
CXCR4 round1 reverse | ChIP | TTT TGG AGT ACG GGT ACC TCC |
CXCR4 nested forward | ChIP | TAG CAA AGT GAC GCC GAG GG |
CXCR4 nested reverse | ChIP | AAT GTC CTG GCC GCT TCT GC |
β-Tubulin round1 forward | ChIP | AAA GGC CAC TAC ACA GAG GG |
β-Tubulin round1 reverse | ChIP | TAC CAA CTG ATG GAC GGA GAG G |
β-Tubulin nested forward | ChIP | TTG ATT CTG TCC TGG ATG TGG |
β-Tubulin nested reverse | ChIP | TCA GAC ACT TTG GGT GAA GGC |
CXCR4 WT forward | EMSA | CTT GAG TCC CGC CGC GCG CGG CGG CTT GCA CGC TGT TTG CAA A |
CXCR4 WT reverse | EMSA | CTT ACG TTT GCA AAC AGC GTG CAA GCC GCC GCG CGC GGC GGG ACT |
CXCR4 ΔP1 forward | EMSA | CTT GAT TAA TTA CGC GCG CGG CGG CTT GCA CGC TGT TTG CAA A |
CXCR4 ΔP1 reverse | EMSA | CTT ACG TTT GCA AAC AGC GTG CAA GCC GCC GCG CGC GTA ATT AAT |
CXCR4 ΔP2 forward | EMSA | CTT GAG TCC CGC CGC GCG CGG CGG CTT TAA TTA TGT TTG CAA A |
CXCR4 ΔP2 reverse | EMSA | CTT ACG TTT GCA AAC ATA ATT AAA GCC GCC GCG CGC GGC GGG ACT |
CXCR4 ΔF forward | EMSA | CTT GAG TCC CGC CGC GCG CGG CGG CTT GCA CGC GGC CGG CAA A |
CXCR4 ΔF reverse | EMSA | CTT ACG TTT GCC GGC CGC GTG CAA GCC GCC GCG CGC GGC GGG ACT |
CXCR4 ΔP1ΔP2 forward | EMSA | CTT GAA CTC AGC CGC GCG CGG CGG CTT GGG CGA TGT TTG CAA A |
CXCR4 ΔP1ΔP2 reverse | EMSA | ACG TTT GCA AAC ATC GCC CAA GCC GCC GCG CGC GGC TGA GTT |