Table 1.
List of chromosome assignments and primers for SSR and SNP markers
| Markers | Chr.a | Forward primer (5′–3′) | Reverse primer (5′–3′) | |
|---|---|---|---|---|
| 1 | Epms 725 | 1 | TTGAATCGTTGAAGCCCATT | ATCTGAAGCTGGGCTCCTTT |
| 2 | Hpms 1-41 | 1 | GGGTATCATCCGTTGAAAGTTAGG | CAAGAGGTATCACAACATGAGAGG |
| 3 | Hpms 1-281 | 1 | TGAGGCAGTGGTATGGTCTGC | CCCGAGTTCGTCTGCCAATAG |
| 4 | Gpms 169 | 2 | TCGAACAAATGGGTCATGTG | GATGAGGGTCCTGTGCTACC |
| 5 | Gpms 37 | 2 | ATTTGTATATTATTTCTTGGCCTTG | TGAACTACCCAATTCCAGCC |
| 6 | Hpms E073 | 3 | TTATTCAGGCCCACTTATCGAA | CAGCAGCCAAATTCTTGATTTC |
| 7 | Hpms E008 | 3 | CCCCTTAACTTTTAATTCTAGATCTGC | TCGTTGTTCCTCCATCACCTCA |
| 8 | Gpms 198 | 3 | AGCTTTAGACAGTGTCTGCGTG | TGATGATAAATTGCCTTCCG |
| 9 | Epms 386 | 3 | ACGCCAAGAAAATCATCTCC | CCATTGCTGAAGAAAATGGG |
| 10 | Hpms E122 | 3 | GCAATGGCTCAGGTCTCCATCT | TGTCGCCCTTTAATGCAAAACC |
| 11 | Gpms 93 | 3 | ATCCTTGGCGTATTTTGCAC | TTCACTTTGCACACAGGCTT |
| 12 | HpmsAT2 14 | 4 | TTTAGGGTTTCCAACTCTTCTTCC | CTAACCCCACCAAGCAAAACAC |
| 13 | Hpms 1-165 | 4 | GGCTATTTCCGACAAACCCTCAG | CCATTGGTGTTTTCACTGTTGTG |
| 14 | Hpms E099 | 4 | CAATCATTGCCACCTTATTTTTGC | TCACAAGGGGTTGATGGAAATG |
| 15 | Hpms E055 | 4 | GGCCGCTTAAAGTTGTTCAAGG | TGTGGCTAGCGGTGTTATGCAC |
| 16 | Hpms E049 | 4 | CACTCCAACAGCAGCAGCAAAC | CCTTGCCGATGTTGAAGCTTTT |
| 17 | Hpms E085 | 4 | TGCCCAAATATCAGTCAAGCTCA | TGGTTGTTGTTCTCATGGTGGTG |
| 18 | Hpms E111 | 4 | CCATCATTTCTCCCCAATTCCA | GAGAGCAGAAGAAGGGGTGGTG |
| 19 | Hpms E116 | 5 | CATCTCTCCGTTGAATCTATTTCC | ACGGTCATCCATTAGAACCGTA |
| 20 | Hpms 2-45 | 5 | CGAAAGGTAGTTTTGGGCCTTTG | TGGGCCCAATATGCTTAAGAGC |
| 21 | Gpms 165 | 5 | TGAACAATAATAATTGACAGGACAG | AGCCTCGCAGTTTGTTCTTAC |
| 22 | Hpms 2-23 | 5 | CCCTCGGCTCAGGATAAATACC | CCCAGACTCCCACTTTGTG |
| 23 | Hpms E015 | 5 | TTGTGAGGGTTTGACACTGGGA | CCGAGCTCGATGAGGATGAACT |
| 24 | Hpms E014 | 6 | CTTTGGAACATTTCTTTGGGGG | GCGGACGTAGCAGTAGGTTTGG |
| 25 | Hpms E088 | 6 | GCAAATGGTTCCCTAAACTGCTT | GCTCTCCGTTTCCGATGTGATT |
| 26 | Hpms E078 | 6 | TTTGTGAAGAAGCAACCGGTGA | TGTGAGGAAGAAAGTGCGAAGG |
| 27 | Hpms 1-5 | 6 | CCAAACGAACCGATGAACACTC | GACAATGTTGAAAAAGGTGGAAGAC |
| 28 | HpmsAT2-20 | 6 | TGCACTGTCTTGTGTTAAAATGACG | AAAATTGCACAAATATGGCTGCTG |
| 29 | HpmsE113 | 6 | CCCTAAAGCTCGAGAAATTGAAGC | GAATGCTGTTGCTGGGGTTGTT |
| 30 | Epms 376 | 6 | ACCCACCTTCATCAACAACC | ATTTGTGGCTTTTCGAAACG |
| 31 | Hpms E068 | 7 | TGTTCCTTTTGTTGTTACCTTTTG | CGTCTAGGAATGGAAGAAGAGC |
| 32 | Hpms E057 | 7 | ACCCACTCCCTCTCCTCTTTGG | GCAGTGGAAAAACAGTCCTGTGG |
| 33 | Hpms 1-227 | 7 | CGTGGCTTCAAGTATGGACTGC | GGGGCGGAACTTTTCTTATCC |
| 34 | Epms 342 | 8 | CTGGTAGTTGCAAGAGTAGATCG | ATGATCTTTGACGACGAGGG |
| 35 | Hpms E115 | 1/8 | TCATCTCATAGCCTGCCCCCTA | CCACTTGAAGAAGCCATGACCA |
| 36 | Hpms 1-148 | 1/8 | GGCGGAGAAGAACTAGACGATTAGC | CCACCCATTCCACATAGACG |
| 37 | Hpms E004 | 1/8 | TGGGAAGAGAAATTGTGAAAGCA | CAATGCCAACAATGGCATCCTA |
| 38 | Epms 310 | 8 | TGGGAAGAGAAATTGTGAAAGC | AGGAAACATGGTTCAATGCC |
| 39 | Gpms 194 | 9 | AGGTGGCAGTTGAGGCTAAG | GTTCTAGGTCTTTGCCCTGG |
| 40 | Hpms 1-3 | 9 | TGGGAAATAGGATGCGCTAAACC | AACTTTAAGACTCAAAATCCATAACC |
| 41 | Hpms E051 | 9 | TGGCCAGCTTCACACAGAGGTA | TGTCACAATATTGGAGGCCAGAA |
| 42 | Epms 419 | 9 | TTCAGGTGCAGGTATCATCG | GGGTACTTGTCCATTTATCCAG |
| 43 | Hpms E143 | 9 | CCATTCAGCTAGGGTTCAGTCCA | CGACCAAATCGAATCTTCGTGA |
| 44 | Hpms E013 | 10 | GCGCCAAGTGAGTTGAATTGAT | CACCAATCCGCTTGCTGTTGTA |
| 45 | Hpms E059 | 10 | GCAAGGACGCAGTCGTTAGACA | CCGCCTGTGCTGAATTGTTTAG |
| 46 | Hpms 2-21 | 10 | TTTTTCAATTGATGCATGACCGATA | CATGTCATTTTGTCATTGATTTGG |
| 47 | Hpms E065 | 10 | TGAAATAGGCCAATCCCTTTGC | ATTCCCTGGGATTCCTGCATTA |
| 48 | Hpms E031 | 10 | CCCTAAATCAACCCCAAATTCAA | CCCCCATTACCTGACTGCAAAA |
| 49 | Hpms E096 | 10 | CGGGTCAAACAAAAACCGAAGT | GCTTGTGGTTGAGCTCGCTCTT |
| 50 | Gpms 159 | 10 | AAGAACATGAGGAACTTTAACCATG | TTCACCCTTCTCCGACTCC |
| 51 | Epms 561 | 11 | ATTGGACTTCAAATTTGGCC | AAACCAAAATCAGCATTAAAATATAAAC |
| 52 | Epms 410 | 11 | GGAAACTAAACACACTTTCTCTCTC | ACTGGACGCCAGTTTGATTC |
| 53 | Epms 391 | 11 | TTTCTTCTCTGGCCCTTTTG | ACGCCTATTGCGAATTTCAG |
| 54 | Hpms 2-2 | 11 | GCAAGGATGCTTAGTTGGGTGTC | TCCCAAAATTACCTTGCAGCAC |
| 55 | Hpms E094 | 12 | CCAGTTGAGAGCTGCTGCAAAA | CACCAACAAAACAAAGGCCACA |
| 56 | Hpms E128 | 12 | TGGATCCCAAAAGACTCAGAACA | TATTTCCCTCAGTCGAGGTCGT |
| 57 | Hpms E064 | 12 | CCCTCCTTTTACCTCGTCAAAAA | ATGCCAAGGAGCAATGAGAACC |
| 58 | LM_2001 | 5 | CTTTGGAGGTAGCGGTATG | CAACAAACGAACCACAATG |
| 59 | LM_2002 | 5 | CCCGTTTACAAGCAAAGAG | GACCCCTGAAGAACCTCTC |
| 60 | LM_2004 | 5 | TGTAGGATTACAAGAACATTATCG | GCGAGCTATTACACCGAAG |
| 61 | LM_2006 | 5 | TCGGCCTGACTAGTATTGAC | CGGGTACCAGATGTAGGG |
| 62 | Isotig18917-234 | 6 | ACTAGTAAGAGCAGGGGTG | TCAATAGATCCAAATGCAGATTGAAC |
Putative chromosome positions and primer sequences of the Hpms markers are based on Lee et al. (2009) and Yi et al. (2006); of the Gpms and Epms markers on an unpublished Institut National de La Recherche Agronomique (INRA, France) map (personal communication, Dr. A. Palloix) and Wu et al. (2009); of the LM markers on Linders et al. (2010); of SNP marker Isotig18917-234 were communicated by Dr A. Palloix
aPutative chromosome position