TABLE 1.
Metadata and isolate details for S. Enteritidis isolates
| Outbreak (blank for sporadics) | MN WGS IDa for isolate | Collection date (mo/day/yr) | State | Source | NCBI accession no. | CDC PFGE patternb |
|---|---|---|---|---|---|---|
| 1 | MDH-2014-00209 | 9/16/2000 | MN | Feces | SRS569751 | JEGX01.0004 |
| 1 | MDH-2014-00210 | 9/14/2000 | MN | Feces | SRS569711 | JEGX01.0004 |
| 1 | MDH-2014-00211 | 9/18/2000 | MN | Feces | SRS569685 | JEGX01.0004 |
| 1 | MDH-2014-00212 | 9/19/2000 | MN | Feces | SRS569765 | JEGX01.0004 |
| 2 | MDH-2014-00218 | 5/8/2001 | MN | Feces | SRS569723 | JEGX01.0050 |
| 2 | MDH-2014-00219 | 5/9/2001 | MN | Feces | SRS569721 | JEGX01.0050 |
| 2 | MDH-2014-00220 | 5/9/2001 | MN | Feces | SRS569701 | JEGX01.0050 |
| 2 | MDH-2014-00222 | 5/25/2001 | MN | Feces | SRS569753 | JEGX01.0050 |
| 2 | MDH-2014-00223 | 5/25/2001 | MN | Feces | SRS570367 | JEGX01.0050 |
| 2 | MDH-2014-00225 | 6/10/2001 | MN | Feces | SRS569694 | JEGX01.0050 |
| 2 | MDH-2014-00228 | 7/6/2001 | MN | Feces | SRS569758 | JEGX01.0050 |
| 3 | MDH-2014-00227 | 6/28/2001 | MN | Feces | SRS569799 | JEGX01.0021 |
| 3 | MDH-2014-00229 | 7/4/2001 | MN | Feces | SRS569790 | JEGX01.0021 |
| 3 | MDH-2014-00230 | 7/5/2001 | MN | Feces | SRS569707 | JEGX01.0021 |
| 3 | MDH-2014-00251 | 7/16/2001 | MN | Feces | SRS569677 | JEGX01.0021 |
| 4 | MDH-2014-00234 | 11/23/2003 | MN | Feces | SRS569755 | JEGX01.0004 |
| 4 | MDH-2014-00252 | 11/20/2003 | MN | Feces | SRS569683 | JEGX01.0004 |
| 4 | MDH-2014-00253 | 12/1/2003 | MN | Feces | SRS569798 | JEGX01.0004 |
| 4 | MDH-2014-00254 | 11/27/2003 | MN | Feces | SRS569759 | JEGX01.0004 |
| 5 | MDH-2014-00238 | 8/15/2011 | MN | Feces | SRS569681 | JEGX01.0004 |
| 5 | MDH-2014-00239 | 8/22/2011 | MN | Feces | SRS569674 | JEGX01.0004 |
| 5 | MDH-2014-00240 | 8/25/2011 | MN | Feces | SRS569695 | JEGX01.0004 |
| 5 | MDH-2014-00242 | 9/13/2011 | MN | Feces | SRS569722 | JEGX01.0004 |
| 5 | MDH-2014-00244 | 10/14/2011 | MN | Egg Farm Environmental Swab | SRS569702 | JEGX01.0004 |
| 6 | MDH-2014-00249 | 1/31/2014 | MN | Feces | SRS569706 | JEGX01.0034 |
| 6 | MDH-2014-00250 | 1/30/2014 | MN | Feces | SRS569696 | JEGX01.0034 |
| 7 | MDH-2014-00255 | 1/1/2014 | OH | Feces | SRS569752 | JEGX01.0034 |
| 7 | MDH-2014-00256 | 2/1/2014 | OH | Feces | SRS569675 | JEGX01.0034 |
| MDH-2014-00202 | 6/28/2000 | MN | Feces | SRS569705 | JEGX01.0004 | |
| MDH-2014-00203 | 7/5/2000 | MN | Feces | SRS569710 | JEGX01.0002 | |
| MDH-2014-00204 | 7/13/2000 | MN | Feces | SRS569744 | JEGX01.0009 | |
| MDH-2014-00205 | 8/18/2000 | MN | Feces | SRS569692 | JEGX01.0004 | |
| MDH-2014-00206 | 8/18/2000 | MN | Feces | SRS569717 | JEGX01.0002 | |
| MDH-2014-00207 | 8/27/2000 | MN | Feces | SRS569716 | JEGX01.0002 | |
| Suspect in outbreak 1 | MDH-2014-00208 | 9/19/2000 | MN | Feces | SRS569796 | JEGX01.0004 |
| Suspect in outbreak 1 | MDH-2014-00213 | 9/27/2000 | MN | Feces | SRS569714 | JEGX01.0004 |
| MDH-2014-00214 | 3/4/2001 | MN | Feces | SRS569699 | JEGX01.0002 | |
| MDH-2014-00215 | 4/15/2001 | MN | Blood | SRS569693 | JEGX01.1077 | |
| MDH-2014-00216 | 4/27/2001 | MN | Blood | SRS569682 | JEGX01.0005 | |
| MDH-2014-00217 | 4/28/2001 | MN | Feces | SRS569794 | JEGX01.0002 | |
| MDH-2014-00221 | 5/6/2001 | MN | Feces | SRS569724 | JEGX01.0009 | |
| MDH-2014-00224 | 6/8/2001 | MN | Feces | SRS569673 | JEGX01.0005 | |
| MDH-2014-00226 | 6/16/2001 | MN | Feces | SRS569739 | JEGX01.0021 | |
| MDH-2014-00231 | 6/25/2001 | MN | Feces | SRS569680 | JEGX01.0004 | |
| MDH-2014-00232 | 10/11/2001 | MN | Feces | SRS569679 | JEGX01.0034 | |
| MDH-2014-00233 | 12/3/2001 | MN | Blood | SRS569766 | JEGX01.0004 | |
| MDH-2014-00235 | 9/26/2005 | MN | Feces | SRS569712 | JEGX01.0004 | |
| MDH-2014-00236 | 5/3/2011 | MN | Feces | SRS569708 | JEGX01.0019 | |
| MDH-2014-00237 | 6/17/2011 | MN | Feces | SRS569703 | JEGX01.0019 | |
| Suspect in outbreak 5 | MDH-2014-00241 | 9/10/2011 | MN | Feces | SRS569718 | JEGX01.0004 |
| Suspect in outbreak 5 | MDH-2014-00243 | 10/11/2011 | MN | Feces | SRS569676 | JEGX01.0004 |
| MDH-2014-00245 | 6/20/2012 | MN | Feces | SRS569719 | JEGX01.0034 | |
| MDH-2014-00246 | 7/24/2012 | MN | Feces | SRS569800 | JEGX01.0004 | |
| MDH-2014-00247 | 7/30/2012 | MN | Arm swab | SRS569704 | JEGX01.0094 | |
| MDH-2014-00248 | 6/4/2013 | MN | Feces | SRS569795 | JEGX01.0019 |
a
ID, identifier.
b
XbaI pattern only.