Table 7.
Unique sequences in V. anguillarum NB10 identified by genome comparisons
| Base pairs | Size (kb) | CDSs | |
|---|---|---|---|
| Chromosome 1 | |||
| Prophage | |||
| Intact | 1,891,762…1,935,924 | 44.1 | 69 |
| Partial | 2,964,881…2,973,261 | 8.3 | 8 |
| Genomic Islands | |||
| GI-1 | 34,299…47,256 | 12.9 | 12 |
| GI-2 | 104,658…109,015 | 4.3 | 5 |
| GI-3 | 138,956…147,914 | 8.9 | 12 |
| GI-4 | 288,556…298,943 | 10.3 | 15 |
| GI-5 | 445,355…487,284 | 41.9 | 37 |
| GI-6 | 494,899…502,274 | 7.3 | 5 |
| GI-7 | 681,585…709,820 | 28.2 | 27 |
| GI-8 | 942,447…952,116 | 9.6 | 9 |
| GI-9 | 1,572,019…1,589,186 | 17.1 | 13 |
| GI-10-13 | 1,891,012…1,937,302 | 46.2 | 61 |
| GI-14-17 | 2,864,895…2,925,178 | 60.2 | 54 |
| GI-18 | 2,938,796…2,955,240 | 16.4 | 17 |
| GI-19 | 2,994,229…3,011,196 | 16.9 | 14 |
| Genome gaps a | |||
| GG-A | 820,080…832,800 | 12.7 | 12 |
| GG-B | 1,888,140…1,934,940 | 46.8 | 76 |
| GG-C | 2,938,440…2,951,880 | 13.4 | 13 |
| Chromosome 2 | |||
| Prophage | |||
| Questionable | 401,647…447,433 | 45.7 | 22 |
| Genomic Islands | |||
| GI-20 | 286,348…292,555 | 6.2 | 5 |
| GI-21 | 392,736…414,906 | 22.1 | 22 |
| GI-22 | 431,537…439,839 | 8.3 | 12 |
| GI-23 | 464,750…469,836 | 5.1 | 5 |
| GI-24 | 473,125…479,299 | 6.1 | 10 |
| GI-25 | 546,066…578,220 | 32.1 | 35 |
| GI-26 | 639,559…674,888 | 35.3 | 24 |
| GI-27 | 682,155…688,431 | 6.2 | 6 |
| GI-28 | 711,800…720,165 | 8.3 | 6 |
| GI-29 | 738,270…755,649 | 17.3 | 10 |
| Genome gaps a | |||
| GG-D | 292,140…294,360 | 1.9 | 3 |
| GG-E | 396,120…417,780 | 21.6 | 13 |
| GG-F | 489,780…500,880 | 11.1 | 19 |
| GG-G | 557,580…571,320 | 13.7 | 11 |
| GG-H | 643,380…673,560 | 34.0 | 22 |
| GG-I | 682,320…756,540 | 74.2 | 53 |
| GG-J | 971,280…981,740 | 10.5 | 9 |
aGaps indicate regions of the NB10 genome that are not found in the genomes of strains 775 and M3 as detected by BLAST searches using the BRIG program [44]