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. 2015 Sep 15;5:14109. doi: 10.1038/srep14109

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Copyright © 2015, Macmillan Publishers Limited

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(a) Genetic marker 16S rRNA gene-based and (b) whole-genome SNP-based phylogenetic trees. The trees were constructed using MEGA 5.1 software with the neighbor-joining method. The confidence of the trees was assessed by 1000-replicate bootstrapping. The scale bar in panel (a) means sequence divergence; while the tree shown in panel (b) is a topological structure in which three distinct clades are colored in red, blue and green, respectively. Only strains having complete or draft genome sequences in GenBank were included. The 16S rRNA gene of strain 4_3 was not available and thus is not presented in the marker gene-based tree.