Table 2.
Names, NCBI and CRIBI accession numbers and EST and splice variant numbers of the cytokinin-related grapevine sequences identified in this study
| Name | NCBI Reference Sequence | NCBI ESTs | Fernandes et al. [109]a | CRIBI (V2) Locus ID | Splice variants | Amplified variants |
|---|---|---|---|---|---|---|
| VviIPT2 | XM_002263711 | 8 | VIT_206s0061g01410 | 1,2 | 1,2 | |
| VviIPT9 | XM_002282976 | 3 | VIT_219s0014g01630 | 1,2 | 1 | |
| VviIPT10 | XM_002279335 | 0 | VIT_201s0011g03640 | 1 | 1 | |
| VviIPT11 | XM_002268812 | 0 | VIT_209s0070g00710 | 1 | 1 | |
| VviIPT12 | XM_002271926 | 2 | VIT_207s0104g00270 | 1 | 1 | |
| VviIPT13 | XM_003632592 | 0 | VIT_208s0040g01010 | 1 | 1 | |
| VviIPT14 | XM_002277555 | 4 | VIT_205s0020g02630 | 1 | 1 | |
| VviIPT15 | XM_002278900 | 5 | VIT_208s0040g00100 | 1–5 | 1–5 | |
| VviLOG5a | XM_010665788 | 6 | VIT_218s0001g00210 | 1 | 1 | |
| VviLOG5b | XM_002281803 | 4 | VIT_203s0038g03420 | 1–3 | 1–3 | |
| VviLOG10 | XM_002276739 | 38 | VIT_218s0001g14030 | 1–6 | 1–6 | |
| VviLOG11 | XM_002275378 | 0 | VIT_208s0007g02480 | 1 | 1 | |
| VviLOG12 | XM_002276243 | 1 | VIT_208s0040g01780 | 1 | 1 | |
| VviLOG13 | XM_002285210 | 15 | VIT_206s0004g02680 | 1–7 | 1–7 | |
| VviLOG14 | XM_002285680 | 2 | VIT_206s0004g00590 | 1–4 | 1–4 | |
| VviLOG15 | XM_002274711 | 0 | VIT_213s0064g00740 | 1–8 | 1,3,5–8 | |
| VviLOG16 | XM_002277816 | 0 | VIT_208s0007g08340 | 1 | 1 | |
| VviLOG17 | XM_002278269 | 5 | VIT_204s0008g01040 | 1 | 1 | |
| VviCKX5 | XM_002280761 | 21 | VIT_218s0001g13200 | 1,2 | 1,2 | |
| VviCKX6a | XM_002270805 | 1 | VIT_213s0158g00320 | 1–3 | 1–3 | |
| VviCKX6b | XM_002284524 | 1 | VIT_200s0252g00040 | 1 | 1 | |
| VviCKX7 | XM_002279924 | 15 | VIT_204s0008g01880 | 1–3 | 1–3 | |
| VviCKX8 | XM_002279483 | 0 | VIT_211s0016g02110 | 1 | 1 | |
| VviCKX9 | XM_003632356 | 0 | VIT_207s0005g06025 | 1 | 1 | |
| VviCKX10 | XM_002263610 | 1 | VIT_207s0005g05960 | 1 | 1 | |
| VviCKX11 | XM_002264409 | 0 | VIT_207s0005g06010 | 1 | 1 | |
| VviCHK1 | XM_002265212 | 2 | VIT_204s0023g03680 | 1,2 | na | |
| VviCHK2 | XM_002269941 | 2 | VvCyt1 | VIT_212s0057g00690 | 1–6 | 1–5 |
| VviCHK3 | XM_002276925 | 24 | VvCyt2 | VIT_201s0010g03780 | 1–4 | 1–4 |
| VviCHK4 | XM_002285081 | 10 | VvCyt3 | VIT_201s0011g06190 | 1–6 | 1–5 |
| VviCHK5 | XM_002271707 | 2 | VIT_204s0069g00750 | 1–4 | na | |
| VviCKI | XM_002270283 | 0 | VIT_207s0005g01380 | 1 | na | |
| VviRR11a | XM_002274637 | 2 | VvRRb1 | VIT_217s0000g10100 | 1,2 | 1,2 |
| VviRR11b | XM_002267580 | 1 | VvRRb5 | VIT_201s0010g02230 | 1 | 1 |
| VviRR25 | XM_002269335 | 0 | VvRRb2 | VIT_207s0005g01010 | 1 | 1 |
| VviRR26 | XM_002270082 | 0 | VvRRb4 | VIT_211s0052g01160 | 1 | 1 |
| VviRR27 | XM_002275106 | 13 | VvRRb6 | VIT_205s0077g01480 | 1–4 | 1–4 |
| VviRR28 | XM_002281255 | 20 | VIT_201s0011g05830 | 1 | 1 | |
| VviRR29 | XM_002270797 | 4 | VvRRb3 | VIT_211s0206g00060 | 1,2 | 1,2 |
| VviRR30 | XM_002282892 | 8 | VIT_204s0008g05900 | 1–4 | 2,4 | |
| VviRR31 | FJ822980 (partial cds) | 0 | VIT_201s0026g00940 | 1 | 1 | |
| VviRR32 | XM_002283751 | 9 | VvRRa1 | VIT_217s0000g07580 | 1 | 1 |
| VviRR33 | XM_002280710 | 3 | VvRRa3 | VIT_213s0067g03070 | 1 | 1 |
| VviRR34 | XM_002284468 | 1 | VIT_218s0001g02540 | 1–4 | 1 | |
| VviRR35 | XM_002273954 | 7 | VvRRa2 | VIT_208s0007g05390 | 1 | 1 |
| VviRR36 | XM_002266214 | 0 | VIT_213s0067g03460 | 1 | 1 | |
| VviRR37 | XM_002268316 | 4 | VvRRa4 | VIT_213s0067g03510 | 1 | 1 |
| VviRR38 | XM_002267339 | 0 | VIT_213s0067g03450 | 1 | 1 | |
| VviRR39 | XM_002267896 | 2 | VIT_213s0067g03490 | 1 | 1 | |
| VviRR40 | XM_003634849 | 0 | VIT_213s0067g03480 | 1 | 1 | |
| VviRR41 | XM_002267368 | 8 | VIT_213s0067g03430 | 1 | 1 |
Phylogenetic trees for each family, using grapevine and Arabidopsis nucleotide sequences, are shown in Additional files 3 and 4. Additional file 1 contains the TAIR accession numbers of the Arabidopsis sequences used for the analyses. na, not applicable
anames previously used by Fernandes et al. [109]