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. 2015 Sep 18;59(10):6203–6209. doi: 10.1128/AAC.00899-15

TABLE 1.

Top 10 templates used by I-TASSERa

Rank PDB hit Ident1 Ident2 Cov. Norm. Z-score
1 4pypA 0.28 0.26 0.87 3.85
2 4gbyA 0.26 0.26 0.88 5.79
3 4pypA 0.27 0.26 0.87 5.39
4 4gc0A 0.25 0.26 0.88 3.91
5 4gc0A 0.26 0.26 0.89 3.65
6 4pypA 0.28 0.26 0.87 5.35
7 4gc0A 0.26 0.26 0.89 4.83
8 4pypA 0.29 0.26 0.87 6.61
9 4pypA 0.28 0.26 0.87 4.68
10 4pypA 0.28 0.26 0.87 4.82
a

Rank of templates represents the top 10 threading templates used by I-TASSER; PDB hit, Protein Data Bank template hit; Ident1 is the percent sequence identity of the templates in the threading aligned region with the query sequence; Ident2 is the percent sequence identity of the whole template chains with the query sequence; Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein; Norm. Z-score is the normalized Z-score of the threading alignments; alignment with a normalized Z-score of >1 means a good alignment and vice versa.