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. 2015 Sep 21;2:150052. doi: 10.1038/sdata.2015.52

Table 2. Stacked image data for the 8-bit quality sediment core volumes with 3D 5 pixel non-linear digital median filtered applied (n=20).

Core_ID Scan_ID Replicate_ID Species_ID dimension_X dimension_y dimension_Z number_of_images species_id_folder stack_folder imagestack_fileprefix first_image last_image
34 1 Rep_01 Corophium volutator 1230 1230 700 700 Species_Corophium Core_Volume_01_CV01 Core_Volume_01_CV01_1230_1230_700_ Core_Volume_01_CV01_1230_1230_700_0000.tif Core_Volume_01_CV01_1230_1230_700_0699.tif
24 2 Rep_01 Hediste diversicolor 1701 1401 928 928 Species_Hediste Core_Volume_02_HD01 Core_Volume_02_HD01_1701_1401_928_ Core_Volume_02_HD01_1701_1401_928_0000.tif Core_Volume_02_HD01_1701_1401_928_0927.tif
39 3 Rep_01 Mixed species 1401 1401 892 892 Species_Mixed Core_Volume_03_Mx01 Core_Volume_03_Mx01_1401_1401_892_ Core_Volume_03_Mx01_1401_1401_892_0000.tif Core_Volume_03_Mx01_1401_1401_829_0828.tif
29 4 Rep_01 Hydrobia ulvae 1501 1501 1201 1201 Species_Hydrobia Core_Volume_04_HU01 Core_Volume_04_HU01_1501_1501_1201_ Core_Volume_04_HU01_1501_1501_1201_0000.tif Core_Volume_04_HU01_1501_1501_1201_1200.tif
40 5 Rep_02 Mixed species 1207 1217 923 923 Species_Mixed Core_Volume_05_Mx02 Core_Volume_05_Mx02_1207_1217_923_ Core_Volume_05_Mx02_1207_1217_923_0000.tif Core_Volume_05_Mx02_1207_1217_923_0922.tif
23 6 Rep_02 Hediste diversicolor 1601 1601 1401 1401 Species_Hediste Core_Volume_06_HD02 Core_Volume_06_HD02_1601_1601_1401_ Core_Volume_06_HD02_1601_1601_1401_0000.tif Core_Volume_06_HD02_1601_1601_1401_1400.tif
36 7 Rep_03 Mixed species 1501 1501 1101 1101 Species_Mixed Core_Volume_07_Mx03 Core_Volume_07_Mx03_1501_1501_1101_ Core_Volume_07_Mx03_1501_1501_1101_0000.tif Core_Volume_07_Mx03_1501_1501_1101_1100.tif
31 8 Rep_02 Corophium volutator 1501 1501 1401 1401 Species_Corophium Core_Volume_08_CV02 Core_Volume_08_CV02_1501_1501_1401_ Core_Volume_08_CV02_1501_1501_1401_0000.tif Core_Volume_08_CV02_1501_1501_1401_1400.tif
30 9 Rep_02 Hydrobia ulvae 1501 1501 801 801 Species_Hydrobia Core_Volume_09_HU02 Core_Volume_09_HU02_1501_1501_801_ Core_Volume_09_HU02_1501_1501_801_0000.tif Core_Volume_09_HU02_1501_1501_801_0800.tif
25 10 Rep_03 Hediste diversicolor 2000 2000 2000 2000 Species_Hediste Core_Volume_10_HD03 Core_Volume_10_HD03_2000_2000_2000_ Core_Volume_10_HD03_2000_2000_2000_0000.tif Core_Volume_10_HD03_2000_2000_2000_1999.tif
28 11 Rep_03 Hydrobia ulvae 1501 1501 1001 1001 Species_Hydrobia Core_Volume_11_HU03 Core_Volume_11_HU03_1501_1501_1001_ Core_Volume_11_HU03_1501_1501_1001_0000.tif Core_Volume_11_HU03_1501_1501_1001_1000.tif
38 12 Rep_04 Mixed species 1601 1601 1301 1301 Species_Mixed Core_Volume_12_Mx04 Core_Volume_12_Mx04_1601_1601_1301_ Core_Volume_12_Mx04_1601_1601_1301_0000.tif Core_Volume_12_Mx04_1601_1601_1301_1300.tif
22 13 Rep_04 Hediste diversicolor 1601 1601 1301 1301 Species_Hediste Core_Volume_13_HD04 Core_Volume_13_HD04_1601_1601_1301_ Core_Volume_13_HD04_1601_1601_1301_0000.tif Core_Volume_13_HD04_1601_1601_1301_1300.tif
27 14 Rep_04 Hydrobia ulvae 1601 1601 951 951 Species_Hydrobia Core_Volume_14_HU04 Core_Volume_14_HU04_1601_1601_951_ Core_Volume_14_HU04_1601_1601_951_0000.tif Core_Volume_14_HU04_1601_1601_951_0950.tif
35 15 Rep_03 Corophium volutator 1601 1601 1201 1201 Species_Corophium Core_Volume_15_CV03 Core_Volume_15_CV03_1601_1601_1201_ Core_Volume_15_CV03_1601_1601_1201_0000.tif Core_Volume_15_CV03_1601_1601_1201_1200.tif
32 16 Rep_04 Corophium volutator 1601 1601 1001 1001 Species_Corophium Core_Volume_16_CV04 Core_Volume_16_CV04_1601_1601_1001_ Core_Volume_16_CV04_1601_1601_1001_0000.tif Core_Volume_16_CV04_1601_1601_1001_1000.tif
37 17 Rep_05 Mixed species 1601 1601 1501 1501 Species_Mixed Core_Volume_17_Mx05 Core_Volume_17_Mx05_1601_1601_1501_ Core_Volume_17_Mx05_1601_1601_1501_0000.tif Core_Volume_17_Mx05_1601_1601_1501_1500.tif
33 18 Rep_05 Corophium volutator 1601 1601 1201 1201 Species_Corophium Core_Volume_18_CV05 Core_Volume_18_CV05_1601_1601_1201_ Core_Volume_18_CV05_1601_1601_1201_0000.tif Core_Volume_18_CV05_1601_1601_1201_1200.tif
26 19 Rep_05 Hydrobia ulvae 1601 1601 1101 1101 Species_Hydrobia Core_Volume_19_HU05 Core_Volume_19_HU05_1601_1601_1101_ Core_Volume_19_HU05_1601_1601_1101_0000.tif Core_Volume_19_HU05_1601_1601_1101_1100.tif
21 20 Rep_05 Hediste diversicolor 1601 1601 1401 1401 Species_Hediste Core_Volume_20_HD05 Core_Volume_20_HD05_1601_1601_1401_ Core_Volume_20_HD05_1601_1601_1401_0000.tif Core_Volume_20_HD05_1601_1601_1401_1400.tif