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. 2015 Jul 14;169(1):233–265. doi: 10.1104/pp.15.00350

Table III. Regulatory hubs with the greatest number of connections inferred by MERLIN.

Gene No. of Connections Description Original Cluster MERLIN Module
Medtr1g105350 49 DNA damage repair G4 246
Medtr5g010650 39 Myb TF G2 230
Medtr5g080780 39 Histone acetyltransferase type B G3 230
contig_59380_1 38 Unknown G2 154
Medtr1g086790 37 WRKY TF G2 227
Medtr1g072890 34 Ribosomal RNA-Processing Protein12-Like G3 230
contig_101096_1 33 Receptor-like kinase G2 227
Medtr5g089220 33 Unknown G2 227
contig_54218_1 32 Chromodomain helicase DNA binding G3 230
contig_49136_1 31 Chromodomain helicase DNA binding G3 230
Medtr5g025960 30 RopGEF14 G2 227
contig_9054_1 28 AP2 ERF TF G1 230
Medtr1g087290 26 BRCA1 C Terminus domain containing protein domain G3 227
contig_63535_1 26 DNA repair G3 230
Medtr1g072970 26 Ribosomal RNA-Processing Protein12-Like G3 230
Medtr7g080780 25 TF NAI1 G4 137
Medtr1g050750 25 Pentatricopeptide repeat containing G3 230
Medtr7g098610 25 Receptor-like kinase G4 246
contig_61021_1 24 BZIP TF bZIP50 G4 246
Medtr7g025130 24 Unknown G4 246
Medtr7g017530 23 Pentatricopeptide repeat G2 227
contig_83847_1 23 Nucleolar GTP binding/Nucleostemin-Like1 G3 230
Medtr5g010260 22 Scaffold attachment region DNA binding1 G3 230
Medtr4g116300 21 Zinc binding G2 161
Medtr7g098170 21 Plant homeodomain zinc finger protein11-like/BRCA1-Associated RING Domain1 G3 227
contig_239504_1 21 Calmodulin-binding G4 246
Medtr7g091990 20 Unknown G4 137
AC229724_1053 20 Unknown G2 227
Medtr7g050990 20 (+)-Δ-Cadinene synthase G4 229
Medtr7g089770 20 Pentatricopeptide repeat containing G3 230
Medtr1g085980 19 Palmitoyltransferase ERF2 G3 227
Medtr5g025500 19 Upstream activation factor subunit 30 G3 227
Medtr5g031880 19 AP2 ERF/PLETHORA3 G2 227
Medtr4g033790 18 Unknown G3 227
Medtr5g045910 18 Receptor-like kinase G2 227
Medtr3g099850 18 Neuroguidin G3 230
Medtr1g085040 18 R2R3-MYB TF G4 246
Medtr5g053920 17 AP2 domain TF G4 184
AC233109_38 17 DNA (cytosine-5)-methyltransferase G3 227
Medtr3g031270 17 Wound induced G2 227
Medtr8g094070 17 DNA excision repair cross-complementation group 6 like G2 227
contig_114217_1 17 WD repeat G3 230
contig_73997_1 17 Proliferating cell nuclear antigen G3 230
Medtr3g116200 17 ARID/BRIGHT DNA-binding domain G3 230
Medtr4g128240 17 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase G3 230
Medtr7g113360 17 DNA polymerase G3 230
Medtr8g018150 17 Unknown G3 230