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. 2015 Sep 21;8:29. doi: 10.1186/s12284-015-0064-3

Table 3.

Marker loci associated with grain quality traits commonly detected using QK model

Trait Marker DSN0 DSN90 DSN180 WSN0 WSN45 WSN90
AC GBSSI-4-IF 2.20 × 10−15/0.2218 7.95 × 10−15/0.2186 6.08 × 10−17/0.2497 7.22 × 10−18/0.2552 1.11 × 10−12/0.1809 2.50 × 10−14/0.2014
GBSSI-1-IF 1.13 × 10−26/0.4087 5.11 × 10−28/0.4455 1.98 × 10−26/0.4114 5.20 × 10−29/0.4434 3.35 × 10−24/0.3643 3.05 × 10−23/0.3436
RM111 1.66 × 10−2/0.0448 6.58 × 10−3/0.0513 1.02 × 10−2/0.0493 2.83 × 10−3/0.0531 3.47 × 10−3/0.0562 2.53 × 10−2/0.0394
SSIIa-IF 3.88 × 10−2/0.0328 3.83 × 10−2/0.033 1.61 × 10−2/0.0343 3.50 × 10−2/0.0328 3.26 × 10−2/0.0307
GC GBSSI-4-IF 4.11 × 10−7/0.0962 4.09 × 10−7/0.1094 2.85 × 10−2/0.0353 3.93 × 10−5/0.0704 5.70 × 10−5/0.0762 2.34 × 10−3/0.0515
SSIIa-IF 3.01 × 10−4/0.0523 2.26 × 10−3/0.0516 2.35 × 10−3/0.0528 1.93 × 10−2/0.0346 1.50 × 10−2/0.0343 2.26 × 10−3/0.0539
SSIIaSNP2 3.01 × 10−4/0.0459 2.26 × 10−3/0.0439 1.69 × 10−3/0.0475 1.93 × 10−2/0.0261 7.53 × 10−3/0.0347 2.26 × 10−3/0.0453
SSIIa-F 3.01 × 10−4/0.0603 1.75 × 10−2/0.0447 1.66 × 10−2/0.0474 3.28 × 10−2/0.0344 1.32 × 10−2/0.0471
RM204 9.64 × 10−4/0.0574 2.95 × 10−2/0.045 1.27 × 10−2/0.0503
GL RGS1 1.70 × 10−21/0.3241 4.44 × 10−13/0.2000 1.27 × 10−17/0.2617 3.44 × 10−18/0.2695 4.71 × 10−12/0.1752 1.30 × 10−7/0.1127
RM5436.2 1.54 × 10−4/0.0967 8.15 × 10−5/0.105 9.17 × 10−7/0.1282 1.58 × 10−5/0.1111 3.13 × 10−2/0.0539 2.61 × 10−2/0.0609
RM15206 2.97 × 10−5/0.0793 2.91 × 10−3/0.0518 2.47 × 10−6/0.0842 3.89 × 10−7/0.1042 1.24 × 10−3/0.0549 2.61 × 10−2/0.0348
GBSSII-F 2.59 × 10−3/0.0408 4.15 × 10−3/0.0393 9.17 × 10−7/0.0853 1.67 × 10−4/0.0539 1.38 × 10−2/0.0306
GBSSII-IF 5.71 × 10−3/0.0416 1.05 × 10−2/0.0412 1.68 × 10−6/0.0884 5.23 × 10−4/0.0555 3.13 × 10−2/0.0306
RM5499 4.48 × 10−3/0.0593 6.23 × 10−6/0.1098 2.01 × 10−6/0.1036 9.48 × 10−5/0.0841 2.10 × 10−2/0.047
RM16 5.71 × 10−3/0.0550 3.64 × 10−2/0.0459 1.26 × 10−2/0.0449 8.32 × 10−3/0.0503
RM18751 1.26 × 10−2/0.0327 1.42 × 10−2/0.0341 1.65 × 10−2/0.0368 2.61 × 10−2/0.0341
SSI-2-IF 7.48 × 10−3/0.0311 2.74 × 10−3/0.0342 5.15 × 10−3/0.0323 6.47 × 10−3/0.0355
RMw513 2.89 × 10−2/0.0488 2.74 × 10−3/0.0618 1.83 × 10−3/0.067
GW RGS1 4.28 × 10−8/0.1211 2.09 × 10−4/0.0679 8.96 × 10−7/0.1046 3.53 × 10−7/0.1087 5.67 × 10−5/0.0733 4.95 × 10−3/0.0498
RMw513 1.58 × 10−4/0.0898 4.60 × 10−4/0.0839 1.92 × 10−6/0.1216 1.57 × 10−6/0.1213 5.67 × 10−5/0.0985 8.31 × 10−4/0.0857
Indel1 1.81 × 10−4/0.0651 1.32 × 10−4/0.0739 1.58 × 10−3/0.0551 2.98 × 10−3/0.0498 2.99 × 10−2/0.033
RM21945 6.60 × 10−3/0.051 2.99 × 10−3/0.0572 6.13 × 10−3/0.0518 7.37 × 10−3/0.0506
RM21950 1.39 × 10−4/0.0705 1.32 × 10−4/0.073 5.44 × 10−3/0.0465 2.98 × 10−3/0.0511
SSI-2-IF 1.17 × 10−2/0.0304 1.29 × 10−2/0.0303 1.27 × 10−2/0.0299 2.89 × 10−2/0.0263
RM21964 7.21 × 10−3/0.0494 1.64 × 10−2/0.045 1.29 × 10−2/0.0389
RM18360 1.17 × 10−2/0.0382 1.43 × 10−2/0.0373 8.91 × 10−3/0.0407
LWR RGS1 2.44 × 10−16/0.236 2.27 × 10−9/0.1433 9.44 × 10−13/0.1892 3.84 × 10−14/0.206 1.13 × 10−9/0.1402 1.26 × 10−5/0.0874
RMw513 6.58 × 10−4/0.0759 5.07 × 10−3/0.0673 2.45 × 10−5/0.1053 5.21 × 10−6/0.1132 9.74 × 10−4/0.0781 4.65 × 10−3/0.0705
Indel1 1.27 × 10−5/0.0811 1.60 × 10−4/0.0722 6.99 × 10−5/0.0728 4.09 × 10−4/0.060 4.20 × 10−3/0.0441 4.13 × 10−2/0.0334
RM15206 6.62 × 10−4/0.0537 1.12 × 10−2/0.0408 2.38 × 10−4/0.0642 9.68 × 10−6/0.0827 2.82 × 10−3/0.0485 2.19 × 10−2/0.0395
SSI-2-IF 2.26 × 10−3/0.0365 2.27 × 10−3/0.0386 2.46 × 10−3/0.0376 4.04 × 10−3/0.0367
RM21945 1.69 × 10−3/0.0548 5.89 × 10−3/0.0525 1.41 × 10−3/0.0605 2.46 × 10−3/0.0534
RM21950 1.07 × 10−4/0.0667 8.32 × 10−4/0.0603 2.26 × 10−3/0.0483 1.04 × 10−3/0.0535
RM5436.2 6.12 × 10−3/0.0629 1.36 × 10−3/0.0834 1.91 × 10−3/0.0765 2.46 × 10−3/0.0728
RM5499 1.52 × 10−2/0.0513 2.58 × 10−2/0.0434 1.48 × 10−2/0.0482
GBSSII-F 4.76 × 10−2/0.0175 4.3 × 10−2/0.0347 2.35 × 10−2/0.0240
RM16 1.34 × 10−2/0.0463 3.87 × 10−2/0.0404 4.13 × 10−2/0.0454
DEC SSIIa-F 6.08 × 10−7/0.1061 1.39 × 10−4/0.0791 5.38 × 10−5/0.0896 5.92 × 10−7/0.1066 8.73 × 10−6/0.0867 1.55 × 10−5/0.0888
SSIIa-IF 3.24 × 10−8/0.1223 1.39 × 10−4/0.0737 2.88 × 10−4/0.0626 1.84 × 10−10/0.1535 1.65 × 10−6/0.0901 1.40 × 10−8/0.1297
SSIIaSNP2 4.91 × 10−7/0.0905 2.17 × 10−4/0.0552 1.88 × 10−4/0.0588 1.19 × 10−8/0.1121 1.65 × 10−6/0.080 8.64 × 10−7/0.0894
RMw513 1.98 × 10−2/0.0501 2.82 × 10−4/0.0847 3.81 × 10−4/0.0806 1.52 × 10−2/0.0529 2.44 × 10−2/0.0412 4.16 × 10−2/0.0489
RM18068 4.64 × 10−4/0.070 3.27 × 10−4/0.0755 1.16 × 10−2/0.0503 1.15 × 10−4/0.0814 4.79 × 10−2/0.0282 3.43 × 10−2/0.0455
GBSSI-1-IF 3.67 × 10−6/0.0849 5.47 × 10−3/0.0402 1.02 × 10−3/0.0528 5.16 × 10−3/0.0379 8.08 × 10−4/0.0561
GBSSI-3-IF 4.74 × 10−4/0.0545 2.77 × 10−2/0.0292 1.52 × 10−2/0.0346 9.46 × 10−3/0.033
RI02451 8.25 × 10−4/0.0507 3.40 × 10−3/0.0444 1.01 × 10−2/0.0386 4.61 × 10−4/0.0525
PGWC SSIIa-F 8.22 × 10−9/0.1277 4.11 × 10−6/0.0993 6.33 × 10−4/0.069 5.04 × 10−9/0.1323 3.83 × 10−6/0.0957 1.35 × 10−7/0.1162
SSIIa-IF 1.88 × 10−12/0.1761 1.49 × 10−7/0.1141 6.63 × 10−5/0.0779 2.99 × 10−13/0.1896 6.11 × 10−8/0.1171 1.17 × 10−10/0.1575
SSIIaSNP2 2.94 × 10−10/0.1288 1.49 × 10−7/0.1003 6.63 × 10−5/0.0657 9.58 × 10−11/0.1347 4.80 × 10−7/0.0897 7.79 × 10−9/0.1152
GBSSI-1-IF 1.01 × 10−6/0.089 3.13 × 10−2/0.0337 4.48 × 10−5/0.0689 8.57 × 10−3/0.0409 2.22 × 10−4/0.0625
GBSSI-3-IF 1.81 × 10−4/0.0583 4.60 × 10−2/0.0308 2.23 × 10−2/0.0316 4.28 × 10−2/0.0284
RM18068 8.29 × 10−3/0.0486 2.72 × 10−4/0.0781 3.52 × 10−3/0.0622 3.60 × 10−3/0.0553
RGS1 9.21 × 10−3/0.0351 1.97 × 10−3/0.0462 3.72 × 10−2/0.0304
RI02451 8.03 × 10−3/0.0371 4.93 × 10−3/0.045 4.01 × 10−2/0.0302

Markers associated with single trait more than 3 times using QK were presented on this table

The number before and after “/” represent q value and R 2 respectively. Markers with a significant marker-trait association are reported at q FDR < 0.05. R 2 indicates the percentage of the total variation explained by each locus

Trait abbreviations are as in Table 1