Table 4.

Genes associated with eight grain quality traits commonly detected using haplotype-based association analysis with the QK model

Gene	Trait	DSN0	DSN90	DSN180	WSN0	WSN45	WSN90
GBSSI	AC	2.21 × 10−28	1.44 × 10−29	1.54 × 10−28	6.85 × 10−32	1.09 × 10−25	1.41 × 10−25
		0.4921	0.5309	0.5037	0.5517	0.4396	0.4323
	DEC	2.81 × 10−5	0.0229		1.78 × 10−3	8.76 × 10−3	0.0142
		0.0953	0.0485		0.0689	0.0521	0.0578
	GC	7.17 × 10−7	9.26 × 10−6	0.0100	2.55 × 10−4	6.02 × 10−4	0.0132
		0.1131	0.1117	0.0425	0.0772	0.0805	0.0577
	PGWC	4.27 × 10−6			5.75 × 10−4	0.0261	2.11 × 10−3
		0.1034			0.0744	0.0515	0.0690
GBSSII	GL	5.71 × 10−3	0.0105	1.68 × 10−6	5.23 × 10−4	0.0313
		0.0416	0.0412	0.0884	0.0555	0.0306
SSIIa	AC	9.26 × 10−3	6.36 × 10−3	9.92 × 10−4	1.47 × 10−3	0.0275	1.30 × 10−5
		0.0842	0.0880	0.1022	0.0938	0.0745	0.1274
	DEC	6.08 × 10−7	3.34 × 10−4	2.89 × 10−4	4.45 × 10−8	1.88 × 10−4	1.31 × 10−6
		0.1521	0.1052	0.1081	0.1705	0.1041	0.1497
	PGWC	3.46 × 10−10	1.63 × 10−5	3.22 × 10−3	9.58 × 10−11	1.41 × 10−5	1.18 × 10−8
		0.1978	0.1311	0.0933	0.2110	0.1269	0.1809
SSIVb	DEC		1.13 × 10−2	5.30 × 10−3		2.83 × 10−2
			0.0422	0.0497		0.0292

Trait abbreviations are as in Table 1

The data in upper and below row in each trait represent q ^FDR and R ² respectively