Table 4.
Methylation frequency (%) of SFRP CpG islands at different cutaneous SCC pathological levels
Gene | CpG Site | Stage I | Stage II | Stage III | H | P-value | |||
---|---|---|---|---|---|---|---|---|---|
N | N | N | |||||||
SFRP1 | CpG1_5 | 0 | 0.4012 ± 0.098 | 0 | 0.4521 ± 0.115 | 9 | 0.4952 ± 0.109 | 6.157 | 0.024* |
CpG1_7 | 9 | 0.4011 ± 0.134 | 6 | 0.4811 ± 0.024 | 2 | 0.5121 ± 0.124 | 5.103 | 0.031 | |
CpG2_1 | 7 | 0.4141 ± 0.19 | 0 | 0.4267 ± 0.314 | 2 | 0.4013 ± 0.217 | 2.136 | 0.021 | |
CpG2_8 | 5 | 0.4231 ± 0.824 | 7 | 0.4501 ± 0.224 | 4 | 0.5011 ± 0.523 | 8.514 | 0.017 | |
SFRP2 | CpG1_5 | 44 | 0.3329 ± 0.101 | 29 | 0.3796 ± 0.170 | 19 | 0.4241 ± 0.183 | 6.142 | 0.015 |
CpG2_1 | 47 | 0.4094 ± 0.036 | 48 | 0.4367 ± 0.316 | 17 | 0.4713 ± 0.107 | 6.136 | 0.023 | |
CpG2_3.4 | 55 | 0.4017 ± 0.098 | 42 | 0.4406 ± 0.194 | 18 | 0.4891 ± 0.153 | 5.218 | 0.015 | |
SFRP4 | CpG1_3 | 2 | 0.3029 ± 0.089 | 3 | 0.3496 ± 0.012 | 2 | 0.3867 ± 0.083 | 7.158 | 0.009 |
CpG2_2 | 9 | 0.2994 ± 0.037 | 2 | 0.3367 ± 0.016 | 5 | 0.4113 ± 0.086 | 7.156 | 0.023 | |
SFRP5 | CpG1_5 | 40 | 0.3014 ± 0.052 | 33 | 0.3834 ± 0.021 | 18 | 0.4345 ± 0.037 | 5.54 | 0.031 |
CpG2_1 | 32 | 0.2941 ± 0.098 | 19 | 0.3167 ± 0.314 | 34 | 0.4013 ± 0.057 | 3.136 | 0.021 |
N: number of samples; H: the Kruskal-Wallis H test
*p ≤ 0.05 indicates statistical significance