Skip to main content
. 2015 Sep 23;16:114. doi: 10.1186/s12863-015-0271-3

Table 1.

Pairs of primers used for HRM screening, sequencing and genotyping ABCC1

Exon Number of scanned bp upstream from the exon (without primer) Forward primer (5’ → 3’) Reverse primer (5’ → 3’) Number of scanned bp downstream from the exon (without primer) Size (bp) including primers
Scanning 1 104* CAGCGCTAGCGCCAGCAG CCCGGTGCTTTCCCTCCC 49 234
2 31 GTCCTCTGGGGTGTGTCCT TCTGAATGTAGCCTCGGTCA 201
GCTTTCAGAACACGGTCCTC TTATCACCAACCACCACTCC 52 203
3 20 GGGCGGTCTGTTGTAGGATA CCACTGAGCCCAGCAGAT 31 215
4 129 AAGCTGAGGCAGGAGAATCA AAGGTAGCAAGCAGCTGAGG 163
AGCCTGGGTGACAAGAGTGA TGGATCTCAGGATGGCTAGG 189
ATGCTCACTTTCTGGCTGGT GGCAACGCATGACTTCTACA 72 170
5 27 CAGCCCCAGAATGTGATCTT CACACACACGCACACACACT 19 212
6 20 TTTCCCTCTTCCTCCCAAAC AGCTGAGCATGTTCATTCGTT 59 182
7 33 CCCTCCTCCTGTCATTGACTC GAGTGGAAAGGAGGTGACCA 240
GGAACAAGTCGTGCCTGTTT ATCTTGCCCAGAACCACAAA 104 184
8 74 TTCCCTGAAGGGTGACATTC AGGGGTTCCACTCCTTCTGT 219
GGAGGCTTTGATCGTCAAGT AAAGCCAAGGAGGGAAAATG 29 199
9 14 AGTCATTCCAGGCCCTCTCT TGACGAAGCAGATGTGGAAG 165
TACACCGTGCTGCTGTTTGT CAGGAGGGGATGTGGAAGT 33 175
10 27 TCTTCAGCTGCCACACTCAC GCCACAGGAGGTAGAGAGCA 207
TCTGTGGACGCTCAGAGGTT CTGCCCACACGTAGAAGTCC 38 157
11 21 TCTTCTGTCTGGTGAGTGATGAA TGGACTAAAATCCTCATGGAGAG 49 209
12 41 GTTGAGTGATGGGCTGATCC GGCAGACTTCTTCAGCACCT 217
GCATTCAAGGACAAGGTGCT CCTGGGCAACATAGTGACCT 75 206
13 62 GTCTCCAGGGCCTGTCACT ACCGGAGGATGTTGAACAAG 184
CCAGACAGCCTTCGTGTCTT GCTTTCGTGGCCTAGAACC 42 149
14 49 TTAACCTTGGTTGGTTTTGC CAAGTAGGGAGGACCCAGTG 51 228
15 41 GTTCTGTGCATGTGGAGTCG GGCTCTCTCCACACCATCAC 22 179
16 73 TTCTCTACTTGGGGTAAATTGAGG CTGAGAGCAGGGACGACTTT 177
ATCCCCGAAGGTGCTTTG GCTTTTCCTCAGACCACCAG 37 171
17 12 CTGTCTCACCTCGTTCTCCA CTGACCTTCTCGCCAATCTC 214
CTCCCAGACCTGGAAATCCT CAGCCCACTGAGATTGTGAG 60 134
18 20 ATTTCCCAGGAAACCCACTC GGCCAATCACATTTTCAAAGA 185
CTTCGATGATCCCCTCTCAG CCTAAAGGGGACACGTTCTG 55 166
19 26 CTCACACATGTGCACTCACG TCTGTGCTGGCATAGGTACG 204
GCCAAGCTAGGCAGTCTCAC GGCAAGTAGCTCATGCTGTG 99
TCTGAGATGGGCTCCTACCA CAACCTCAAAGAGGCCAATG 56 182
20 48 TTGTTGCCCTTGGTTTTAGC CTCCTCTTGTCCTCCCACTG 44 223
21 20 GCATCTGTACGGTTGACACC TGGGCGCTCTATAAACTCCA 32 228
22 25 GGTGCGTGCATGTGCTAAG ATGGGGTCATCAGTCCAGAG 184
GGCTTCCAACTATTGGCTCA CAAAACGCTGAGGACTCTAAGG 72 204
23 21 CCCTCTCTGCATTGTGGAGT GTCCACTGTGTCCAGCTCCT 214
ATGAGCTTCTTTGAGCGGAC GGCTTGTCCCGAACACTAAG 14 244
24 22 GAGGGAACCTTCATCAACTCC TCTGGTTCTCGTCCACCTTC 212
CCCATTTCAACGAGACCTTG GGAAAAGATCGAGGCAAAGA 55 208
25 26 AGAGCTGACTCCATGCCTGT GGCTCCCCCATTAACAGACT 32 225
26 24 CGCCCGCTTACTCTAGAAAT CCAAAGACCAAGAGGTCCAG 18 184
27 45 GGGGAGTCACAGCTTTACCA GGGAATGGGTGAGGGAAT 18 248
28 6 ACACCTGGGCCCTTCTGTC TGATCTCTCCTTCGGCAGAC 113
CTGGGCTTATTTCGGATCAA CAGTGCAATCATAGGGCTTG 40 174
29 55 AGTCCTTAGGTCGCCTCCAT CCTTCTGCACATTCATGGTC 227
CCCACCTGAAGGACTTCGT CAAACACCCCTACCGAGATG 47 143
30 74 GTGTCTCCTTTCGCTTCTCC ATGGTGGACTGGATGAGGTC 217
CCTGCTGAGGAAGACGAAGA AGGCAAACTCCCAAAGCCTA 25 204
31 15 CCCTTCCCCTCATGTCTGTA ATAGGCCCTGCAGTTCTGAC 21** 185
Sequencing 1 - - -
2 TCTCGAACTCCCAGCCTAAA TAAGCGGCAGAGCAAAGATT 749
3 GAGCATGGTGACCAGACAAA CTCCTGACCTCAGGTGATCC 638
4 GTGGTGAAACCCCGTCTTTA CCTTGGAGCAACACAGACAA 604
5 CCCGAGTAGCTGGGATTACA ACCATGCCAAGTGAGAAACC 606
6 GGGTTGTTGTGGGGATAGAA AAGCAAAAGCAGTCCAGCAT 622
7 CTGCATGACCCAACAGAATG CAAACTCCCGACCAAGTGAT 651
8 CTTTGACTCTGCCTTCCCTG TAGGGGAGCCTAGTGGGTTT 691
9 AGCAATTAGTGCACAACCCC AAGACATCTACACGCCCACC 613
10 ACAGCCTGGAAGCGTAGAAA AACTGCCAGGGAGCTCTACA 664
11 GAGCGTGGACCTGCTTATTC CACCGGCCTACAAGGTCTAA 608
12 GATGTTGAGTGATGGGCTGA CCTGGGCAACATAGTGACCT 363
13 ATACTGCCCCAGGTTTTTCC AAAAAGGATAGGAATGGCGG 611
14 CTGGGGAAACCCTTGAAAGT CCAAGGGAAAGAAATGCAAG 263
15 CCCAAGATGATCGTCCAGAT TACGCAAGCCAAGAATCTCC 632
16 TCTCCTTTCAGACCTTGCGT CCTGCCTTCTAGGACAGCAC 676
17 ACTCTTTGGAAGCAGGGGTT AGTGAGACCTGAGCCACACC 693
18 CTCAAGCCATCTTCCCACTC GAAGCCAGCCCTGTGACTTA 717
19 CATGTCCCACCTTCAGACCT CCAGCTTAACTCCGTGCTTC 748
20 CTGCACAGTTGCAAAGCACT GCCAAGAGACCTGAGCAAAG 620
21 CCGTCTCTTATGCCATGGTT GGTTCAAATCCCAGTTCTGC 461
22 GCATGTGCTAAGCTGCCTTAT TGTAAAATGGGCACACTGGA 485
23 CTCAAGTGATCCACCCACCT TGCTTCAAAAGCACCACACT 617
24 GAGGTTAGCACTTTGCAGCC ATGATTCATCTGTCCTCCGC 791
25 AAGGCAAGCTTCAGATTCCA AAAGCATTCCCCTCGTACCT 674
26 AAATGCCACGTGACTCTTCC CCTGGTGAGGTATCCAGCTC 242
27 AGGGGACAGAGGGACACAG AAATCTGTGGGGCTCATTTG 618
28 TCATGATGGGAAACTCACCA GAACGATGAAGTAGGGCCAA 669
29 AGACAGGGTGTTGCCATGTT TCAACTGAATGGAGCTGGTG 689
30 GGTGTGAGCTGCTGTTTTGA AAGAGAGGATCCACCCACTG 556
31 CCATGATTGATGTGGGGTAG AAGCACCAGGAAACCACTTG 640
Genotyping SNP Forward primer (5’ → 3’) Reverse primer (5’ → 3’) Size (bp) including primers
c.128G > C TCAGAACACGGTCCTCG ACAGGCCCAGAGGTAAAA 49
c.616-7942A > G AGCAACAGGGCAAACAAATC GACGGAGCCTAAATGTCCAG 76
c.816G > A CTTGTGTTCCAGGCAGC GCAGGATCCTTGGAGGAGTA 51
c.825 T > C
c.1057G > A GCTCCTTTGCAGGTTGCTCATC GGGGCCTTCGTGTCATTCA 48
c.1062 T > C GGTTGCTCATCAAGTTCGTGA GTCTGGGGCCTTCGTGTC 41
c.1218 + 8A > G CATGAGGATCAAGACCGCTG GTGGAAGTCGGGCCACAT 84
c.1299G > T CCAGAAAATCCTCCACGGT GTACGTGGCCAAGTCCATGA 80
c.1684 T > C GTTCTGCTTGCAGGAGGCC TTCAGGGGAAACCGGAGGAT 125
c.1704C > T
c.2012G > T TCACCTTCTCCATCCCCG CACTTTGTCCATCTCAGCCA 104
c.2168G > A CAGGCCTGGATTCAGAATGA ATGGTTCCTCCAGCTGACAT 67
c.2581G > A CAGGAGCTGCTGGCTCG TCTGTGCTGGCATAGGTACG 62
c.2965G > A TCCTTTTCATGTGTAACCATGTG CAATAGTTGGAAGCCAGCG 46
c.3140G > C CTACTCCATGGCCGTGTCC AGGATGCTGTGCAGCAGGT 75
c.3436G > A GAGGTTCTACGTGGCTTCC GAATAGACCGGGGAGCG 69
c.4002G > A GACAAGTCCGGATGCCAG CGAAATAAGCCCAGGGTC 112
c.4009A > G AGCTGGGAAGTCGTCCCT TGATCTCTCCTTCGGCAG 65

104* - upstream from the START codon. 21** - downstream from the STOP codon. Bold variants means these ones which genetic variation was detected during genotyping method