Table 4.
Block 1 | Recombination between blocksd | Block 2 | Recombination between blocksd | Block 3 | Recombination between blocksd | Block 4 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant positiona,b | c.809 + 54C >A | c.809 + 64C>G | Haplotype frequency | c.825 T>C p.Val275= | c.1062 T>C p.Asn354= | c.1218 + 8A>G | Haplotype frequency | c.1678-37G > A | c.1684 T > C p.Leu562= | Haplotype frequency | c.4126-45G > A | c.4487 + 18G N A | Haplotype frequency | |||
Haplotypesc | C | C | 0.686 | 0.65 | T | T | A | 0.659 | 0.45 | A | C | 0.870 | 0.27 | A | G | 0.447 |
A | G | 0.231 | C | C | G | 0.300 | G | T | 0.130 | G | G | 0.405 | ||||
C | G | 0.082 | T | C | G | 0.021 | G | A | 0.148 | |||||||
others | 0.001 | T | C | A | 0.011 | |||||||||||
others | 0.009 |
aPosition according to reference sequences for coding nucleotides NM_004996.3 and amino acid residues NP_004987.2. bBold variants signify haplotype tag SNPs (htSNPs). cMajor alleles in white boxes, minor alleles in shaded boxes; all the haplotypes with their frequencies in population; haplotypes below 1 % grouped as “others”. dLevel of recombination between blocks as a value of multiallelic D’