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. 2015 Sep 23;16(1):205. doi: 10.1186/s13059-015-0756-4

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© He et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Motif discovery results for the human validation data. The table presents the results obtained for each of the TFs (rows) using the de novo assembly pipeline with SEECER and Velvet and the results for the peak-calling method MACS. For each TF we present the known motif (if it exists in the database). For each method we show: (1) the predicted motif that best matches the known motif; (2) whether it matches the known motif in the JASPAR database; and (3) the motif rank in the DREME results for that method and the TOMTOM P value for the match with the known motif. We also include experiment specific comments in the last column