Table 2.
ChIPtig statistics and results of motif finding in the mouse ESC dataset using SEECER
| No. ChIPtigs | Mapped ChIPtigs (%) | Motif rank with peak-calling | Motif rank with de novo pipeline | Motif rank with random ChIPtigs | |
|---|---|---|---|---|---|
| c-MYC | 15,987 | 86.5 | 1 | 1 | N |
| CTCF | 8,209 | 39.6 | 1 | N | N |
| ESRRB | 41,620 | 90.7 | 1 | 1 | 1 |
| KLF4 | 10,144 | 73.5 | 1 | 1 | N |
| NANOG | 19,106 | 43.7 | 1 | N | N |
| n-MYC | 13,663 | 67.2 | 1 | N | N |
| POU5F1 | 12,939 | 75.5 | 1 | N | N |
| SMAD1 | 9,914 | 39.8 | 7 | N | N |
| SOX2 | 12,797 | 77.7 | 1 | 1 | N |
| STAT3 | 17,394 | 84.7 | 1 | 1 | N |
| TCFCP2I1 | 31,701 | 89.4 | N | N | N |
| ZFX | 10,569 | 80.4 | 1 | 1 | 2 |
Columns are the same as in Table 1