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. 2015 Sep 23;16(1):205. doi: 10.1186/s13059-015-0756-4

Table 3.

Co-factors identified in the top 10 motifs predicted by each method for the human validation dataset

SEECER Velvet Alignment
MAX MYC, MYCN MYC, MYCN MYC, MYCN
HCFC1 GABPA, SP1 GABPA, SP1
CEBPB CEBPA CEBPA, SP1, EGR1 FOX01, CEBPA
SREBF1 SP1 SP1
TCF7L2
STAT1
TAL1 SP1, GATA3 TCF3 GATA3, TCF3

Proteins that are found to be interacting with the target and whose motifs are predicted in the top 10 by each method are shown