Table 2.
Classification of the CDS of the housekeeping class derived from the sialotranscriptome of P. megistus
| Class | Number of CDS | Percent of CDS | Number of reads mapped | Percent of reads |
|---|---|---|---|---|
| Protein synthesis machinery | 237 | 5.37 | 1,383,467 | 10.73 |
| Cytoskeletal proteins | 181 | 4.10 | 1,197,908 | 9.30 |
| Lipid metabolism | 192 | 4.35 | 1,111,559 | 8.63 |
| Unknown conserved | 669 | 15.16 | 1,092,340 | 8.48 |
| Transcription machinery | 430 | 9.74 | 1,006,864 | 7.81 |
| Signal transduction | 622 | 14.09 | 970,747 | 7.53 |
| Protein modification | 201 | 4.55 | 886,377 | 6.88 |
| Oxidant metabolism/Detoxification | 42 | 0.95 | 792,334 | 6.15 |
| Protein export | 271 | 6.14 | 595,017 | 4.62 |
| Transporters and channels | 226 | 5.12 | 530,812 | 4.12 |
| Proteasome machinery | 186 | 4.21 | 518,726 | 4.03 |
| Energy metabolism | 129 | 2.92 | 437,013 | 3.39 |
| Extracellular matrix | 117 | 2.65 | 367,581 | 2.85 |
| Carbohydrate metabolism | 129 | 2.92 | 328,566 | 2.55 |
| Nuclear regulation | 223 | 5.05 | 322,378 | 2.50 |
| Intermediary metabolism | 46 | 1.04 | 310,341 | 2.41 |
| Unknown conserved membrane protein | 148 | 3.35 | 209,169 | 1.62 |
| Amino acid metabolism | 62 | 1.40 | 166,980 | 1.30 |
| Transcription factor | 95 | 2.15 | 157,537 | 1.22 |
| Detoxification | 48 | 1.09 | 151,032 | 1.17 |
| Nucleotide metabolism | 76 | 1.72 | 147,693 | 1.15 |
| Immunity | 45 | 1.02 | 123,071 | 0.95 |
| Nuclear export | 30 | 0.68 | 52,541 | 0.41 |
| Storage | 9 | 0.20 | 27,399 | 0.21 |
| Total | 4,414 | 100 | 12,887,452 | 100 |