Table 2. Distances of the catalytic zinc atom to the binding residue and ligand chelating atoms in the models of MC2776 and MC2780 docked to KDAC1 protein of different species.
Compound | MC2776 | MC2780 | ||||||
---|---|---|---|---|---|---|---|---|
Species | H. sapiens | B. malayi | L. donovani | P. falciparum | H. sapiens | B. malayi | L. donovani | P. falciparum |
ZN-ND1 (His171) (a) | 3.18 ± 0.47 | 2.80 ± 0.04 | 2.51 ± 0.18 | 2.64 ± 0.12 | 2.76 ± 0.09 | 2.75 ± 0.09 | 2.30 ± 0.05 | 2.66 ± 0.15 |
ZN-O (Asp169) (b) | 2.26 ± 0.13 | 2.22 ± 0.05 | 2.43 ± 0.03 | 2.39 ± 0.07 | 2.12 ± 0.04 | 2.17 ± 0.03 | 2.41 ± 0.02 | 2.46 ± 0.11 |
ZN-O (Asp257) (c) | 2.68 ± 0.31 | 2.18 ± 0.08 | 2.17 ± 0.08 | 2.18 ± 0.06 | 2.44 ± 0.03 | 2.16 ± 0.06 | 2.09 ± 0.09 | 2.20 ± 0.04 |
ZN-O1 (Ligand) (d) | 2.24 ± 0.29 | 2.08 ± 0.02 | 2.06 ± 0.06 | 2.09 ± 0.05 | 2.04 ± 0.01 | 2.11 ± 0.04 | 2.05 ± 0.04 | 2.13 ± 0.08 |
ZN-O2 (Ligand) (e) | 2.59 ± 0.41 | 2.26 ± 0.05 | 2.83 ± 0.41 | 2.48 ± 0.26 | 2.62 ± 0.15 | 3.09 ± 0.08 | 3.10 ± 0.21 | 2.21 ± 0.11 |
EC50(IC50) (mM) | >10 | 4.39 | - | - | 4.81 | 2.53 | 0.47 | 0.06 |