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. Author manuscript; available in PMC: 2016 Sep 23.
Published in final edited form as: J Am Chem Soc. 2015 Sep 11;137(37):12131–12142. doi: 10.1021/jacs.5b08027

Table 3.

Kinetic Parameters of a Single dNTP Incorporation at 37 °C

dNTP Kd,dNTP (µM) kp (s−1) kp/Kd,dNTP (µM−1 s−1) efficiency ratioa fidelityb probabilityc
19/26-mer-dG1,8
dGTP 288 ± 63 2.3 ± 0.2 8.0 × 10−3 3.1 99.7
dATP 571 ± 103 (7.2 ± 0.6) × 10−3 1.3 × 10−5 1.1 1.6 × 10−3 0.2
dCTP 511 ± 148 (1.4 ± 0.2) × 10−3 2.7 × 10−6 51.9 3.4 × 10−4 0.03
dTTP 1799 ± 242 (1.08 ± 0.09) × 10−2 6.0 × 10−6 1.5 7.5 × 10−4 0.07
20/26-mer-dG1,8
dCTP 219 ± 17 (1.05 ± 0.03) × 10−2 4.8 × 10−5 1188 93.4
dATP 1149 ± 220 (1.1 ± 0.1) × 10−3 9.6 × 10−7 19.8 2.0 × 10−2 1.9
dGTP 424 ± 90 (1.7 ± 0.1) × 10−4 4.0 × 10−7 112.5 8.3 × 10−3 0.8
dTTP 130 ± 56 (2.6 ± 0.3) × 10−4 2.0 × 10−6 41.5 4.0 × 10−2 3.9
21/26-mer-dG1,8
dGTP 681 ± 130 (1.9 ± 0.2) × 10−1 2.8 × 10−4 13.2 97.9
dATP 1630 ± 253 (1.0 ± 0.1) × 10−3 6.1 × 10−7 3.9 2.2 × 10−3 0.2
dCTP 2007 ± 207 (8.6 ± 0.6) × 10−3 4.3 × 10−6 7.2 1.5 × 10−2 1.5
dTTP 937 ± 36 (9.8 ± 0.2) × 10−4 1.0 × 10−6 1.8 3.6 × 10−3 0.4
22/26-mer-dG1,8
dCTP 458 ± 87 2.3 ± 0.2 5.0 × 10−3 6.8 99.5
dATP 1009 ± 317 (4.2 ± 0.7) × 10−3 4.2 × 10−6 1.0 8.4 × 10−4 0.1
dGTP 273 ± 20 (3.3 ± 0.1) × 10−3 1.2 × 10−5 0.71 2.4 × 10−3 0.2
dTTP 1352 ± 181 (1.3 ± 0.1) × 10−2 9.6 × 10−6 1.1 1.9 × 10−3 0.2
a

Calculated as (kp/Kd,dNTP)undamaged /(kp/Kd,dNTP)damaged. Values for (kp/Kd,dNTP)undamaged are from ref 41. “Undamaged” indicates undamaged DNA, while “damaged” denotes DNA containing a template of 26-mer-dG1,8.

b

Calculated as (kp/Kd,incorrect dNTP)damaged/[(kp/Kd,correct dNTP)damaged + (kp/ Kd,incorrect dNTP)damaged].

c

Calculated as ((kp/Kd,dNTP)damaged /[Σ(kp/Kd,dNTP)damaged]) × 100.