Table 3.
Kinetic Parameters of a Single dNTP Incorporation at 37 °C
| dNTP | Kd,dNTP (µM) | kp (s−1) | kp/Kd,dNTP (µM−1 s−1) | efficiency ratioa | fidelityb | probabilityc |
|---|---|---|---|---|---|---|
| 19/26-mer-dG1,8 | ||||||
| dGTP | 288 ± 63 | 2.3 ± 0.2 | 8.0 × 10−3 | 3.1 | 99.7 | |
| dATP | 571 ± 103 | (7.2 ± 0.6) × 10−3 | 1.3 × 10−5 | 1.1 | 1.6 × 10−3 | 0.2 |
| dCTP | 511 ± 148 | (1.4 ± 0.2) × 10−3 | 2.7 × 10−6 | 51.9 | 3.4 × 10−4 | 0.03 |
| dTTP | 1799 ± 242 | (1.08 ± 0.09) × 10−2 | 6.0 × 10−6 | 1.5 | 7.5 × 10−4 | 0.07 |
| 20/26-mer-dG1,8 | ||||||
| dCTP | 219 ± 17 | (1.05 ± 0.03) × 10−2 | 4.8 × 10−5 | 1188 | 93.4 | |
| dATP | 1149 ± 220 | (1.1 ± 0.1) × 10−3 | 9.6 × 10−7 | 19.8 | 2.0 × 10−2 | 1.9 |
| dGTP | 424 ± 90 | (1.7 ± 0.1) × 10−4 | 4.0 × 10−7 | 112.5 | 8.3 × 10−3 | 0.8 |
| dTTP | 130 ± 56 | (2.6 ± 0.3) × 10−4 | 2.0 × 10−6 | 41.5 | 4.0 × 10−2 | 3.9 |
| 21/26-mer-dG1,8 | ||||||
| dGTP | 681 ± 130 | (1.9 ± 0.2) × 10−1 | 2.8 × 10−4 | 13.2 | 97.9 | |
| dATP | 1630 ± 253 | (1.0 ± 0.1) × 10−3 | 6.1 × 10−7 | 3.9 | 2.2 × 10−3 | 0.2 |
| dCTP | 2007 ± 207 | (8.6 ± 0.6) × 10−3 | 4.3 × 10−6 | 7.2 | 1.5 × 10−2 | 1.5 |
| dTTP | 937 ± 36 | (9.8 ± 0.2) × 10−4 | 1.0 × 10−6 | 1.8 | 3.6 × 10−3 | 0.4 |
| 22/26-mer-dG1,8 | ||||||
| dCTP | 458 ± 87 | 2.3 ± 0.2 | 5.0 × 10−3 | 6.8 | 99.5 | |
| dATP | 1009 ± 317 | (4.2 ± 0.7) × 10−3 | 4.2 × 10−6 | 1.0 | 8.4 × 10−4 | 0.1 |
| dGTP | 273 ± 20 | (3.3 ± 0.1) × 10−3 | 1.2 × 10−5 | 0.71 | 2.4 × 10−3 | 0.2 |
| dTTP | 1352 ± 181 | (1.3 ± 0.1) × 10−2 | 9.6 × 10−6 | 1.1 | 1.9 × 10−3 | 0.2 |
Calculated as (kp/Kd,dNTP)undamaged /(kp/Kd,dNTP)damaged. Values for (kp/Kd,dNTP)undamaged are from ref 41. “Undamaged” indicates undamaged DNA, while “damaged” denotes DNA containing a template of 26-mer-dG1,8.
Calculated as (kp/Kd,incorrect dNTP)damaged/[(kp/Kd,correct dNTP)damaged + (kp/ Kd,incorrect dNTP)damaged].
Calculated as ((kp/Kd,dNTP)damaged /[Σ(kp/Kd,dNTP)damaged]) × 100.