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. 2015 Sep 15;11(11):1281–1295. doi: 10.7150/ijbs.12528

Table 2.

The properties of ligands

Ligand Molecular Mass Molecular Volume Log D at pH7.4 Log D at pH5.0 Molecular Surface Area Molecular Polar Surface Area Molecular SASA Molecular Polar SASA
S-(-)-Limomeme 136.1252005 114.9 3.50 3.50 159.03 0 333.501843 0
Terpinolene 136.1252005 113.53 3.64 3.64 162.69 0 336.626127 0
(+)-α-Pinene 136.1252005 115.24 2.87 2.87 151 0 303.035852 0
3-Canene 136.1252005 115.59 2.87 2.87 151.08 0 303.035852 0
(+)-β-Pinene 136.1252005 115.59 2.93 2.93 149.18 0 302.068025 0
Myrcene 136.1252005 116.96 3.69 3.69 172.59 0 349.873088 0
Camphene 136.1252005 111.81 2.93 2.93 147.95 0 302.068025 0
β-Caryophyllene 204.1878008 167.72 4.75 4.75 229.32 0 411.970758 0
(+)-α-Longipinene 204.1878008 171.15 4.12 4.12 220.78 0 381.504767 0
(-)-Isolongifolene 204.1878008 169.44 4.08 4.08 222.73 0 379.259056 0
(+)-Sativene 204.1878008 171.84 4.22 4.22 211.22 0 382.782651 0
(+)-Longifolene 204.1878008 170.47 4.18 4.18 217.73 0 380.53694 0
(-)-Caryophyllene oxide 220.1827154 182.81 4.87 4.87 269.42 20.23 421.190323 52.152873
Butylated hydroxytoluene 220.1827154 180.07 3.52 3.52 233.04 12.53 397.227075 22.68203
Camphor 152.1201151 122.1 2.08 2.08 165.56 17.07 305.688433 43.490521
2-Methoxy-4-vinylphenol.Kosher 150.0680796 102.21 2.12 2.12 159.3 29.46 330.318931 58.183583
(-)-Fenchone 152.1201151 118.67 2.50 2.50 165.91 17.07 305.688433 43.490521

Note: Molecular volume is the 3D volume for each molecule using the current 3D coordinates. Log D is the octanol-water partition coefficient calculated taking into account the ionization states of the molecule in different pH. Molecular surface area is the total surface area for each molecule using a 2D approximation. Molecular polar surface area is the polar surface area for each molecule using a 2D approximation. Molecular SASA is the total solvent accessible surface area for each molecule using a 3D method. Molecular polar SASA is the polar solvent accessible surface area for each molecule using a 3D method.