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. 2015 Sep 25;47:74. doi: 10.1186/s12711-015-0156-y

Table 3.

QTL detected for anatomy traits

Chr Traita Position (cM) CIb Flanking markers of CI Level of significance QTL effectd (NFe)
Chr-wide Genome-widec
1 ILD 46.0 41.8–49.9 Gga_rs13828473 Gga_rs0072444 0.034 NS 0.262 (5)
BW9 133.0 116.0–137.0 Gga_rs14818416 GgaluGA019034 0.017 NS 0.313(3)
DUW 134.0 129.5–138.5 Gga_rs13865892 Gga_rs13654276 0.004 0.020 0.235 (4)Fg
2 ILW/BW 246.0 243.3–247.3 Gga_rs14239031 Gga_rs14240625 0.004 0.030 0.245 (5)
3 DUL/BW 24.0 19.8–26.9 Gga_rs14316939 Gga_rs15262904 <0.0001 0.010 0.242 (5)
DUL/FI 24.0 17.9–32.1 GgaluGA205532 Gga_rs15755832 0.043 NS 0.330 (2)F
JEL/FI 72.0 69.5–84.7 Gga_rs13721073 GgaluGA216152 0.043 NS 0.247 (4)
INL/FI 72.0 70.2–74.4 Gga_rs13721291 Gga_rs14332443 0.031 NS 0.267 (4)
4 ILL 82.0 77.0–88.0 GgaluGA253242 GgaluGA255382 0.002 0.020 0.211 (5)
ILW/FI 98.0 87.0–105.0 GgaluGA254623 GgaluGA257921 0.090 0.100 0.270 (4)
ILW 98.0 87.0–103.0 GgaluGA254623 GgaluGA257921 0.011 0.110 0.308 (3)F
5 JEW/FI 133.0 129.0–143.0 Gga_rs14544598 Gga_rs14551270 0.034 NS 0.269 (3)F
6 BRY 97.0 91.0–103.0 Gga_rs14590462 Gga_rs 15817647 0.003 0.070 0.209 (4)
7 ILD 85.0 77.0–89.0 GgaluGA316720 GgaluGA318716 0.041 NS 0.177 (5)
ILW 85.0 74.0–91.0 GgaluGA316334 GgaluGA318885 0.043 NS 0.199 (4)
DUL 102.0 99.0–105.0 Gga_rs15883120 GgaluGA320562 0.040 NS 0.216 (5)
8 ILW/BW 4.0 0.0–11.0 Gga_rs15892308 Gga_rs15899734 0.029 NS 0.244 (3)
ILL 52.0 41.0–55.0 Gga_rs15911337 Gga_rs15920212 0.022 NS 0.197 (4)
11 JEW 41.0 37.0–50.0 Gga_rs14024860 GgaluGA078344 0.032 NS 0.177 (5)
12 BRY 18.0 8.0–21.0 Gga_rs15632811 Gga_rs14974160 0.035 NS 0.193 (5)
JED 44.0 43.0–46.0 Gga_rs15654987 Gga_rs14042499 0.010 NS 0.256 (3)
13 BRY 50.5 49.0–55.0 Gga_rs14063011 Gga_rs14064923 0.043 NS 0.175 (4)
15 ILL 32.4 28.4–43.4 GgaluGA108494 Gga_rs14094799 0.010 NS 0.212 (3)
16 DUW/FI 0.0f – Gga_rs16057130 Gga_rs15788030 0.035 NS 0.214 (3)
DUW/BW 1.0 – Gga_rs16057130 Gga_rs15788030 0.001 NS 0.200 (5)
JEL/BW 2.0 – Gga_rs16057130 Gga_rs15788030 0.044 NS 0.261 (2)
16 BW9 2.0 – Gga_rs16057130 Gga_rs15788030 0.043 NS 0.204 (2)
18 ILW/FI 5.3 0.0–16.3 Gga_rs14105389 Gga_rs14107424 0.009 NS 0.212 (4)
ILW/BW 5.3 0.7–9.4 Gga_rs14105389 Gga_rs14107424 0.029 NS 0.219 (3)
BW0 14.3 12.9–22.4 GgaluGA118988 Gga_rs13507599 0.044 NS 0.173 (4)
JEL/BW 36.3 30.3–51.3 Gga_rs15825400 Gga_rs16348086 0.022 NS 0.240 (4)
BRY 37.3 22.0–51.0 Gga_rs14110277 Gga_rs16348086 0.050 NS 0.208 (4)F
19 BW9 5.0 0.0–9.8 Gga_rs16076471 GgaluGA124727 0.021 NS 0.177 (5)
BW14 5.0 0.0–7.8 Gga_rs16076471 Gga_rs14116374 0.020 NS 0.189 (5)
DUL/FI 27.0 22.0–35.0 GgaluGA126497 Gga_rs15049206 0.028 NS 0.189 (5)
GW/FI 31.0 25.0–36.0 GgaluGA126497 GgaluGA127728 0.032 NS 0.171 (6)
ILW 45.0 38.2–52.0 Gga_rs15850796 Gga_rs14124099 0.029 NS 0.204 (4)
JEL/BW 45.0 44.3–52.0 GgaluGA128413 Gga_rs14124099 0.030 NS 0.269 (2)
21 GW/FI 24.0 7.8–34.1 GgaluGA182305 Gga_rs14284716 0.018 NS 0.244 (3)
ILL 51.0 44.8–52.0 Gga_rs10726959 Gga_rs14716761 0.045 NS 0.219 (3)
22 ILL/FI 4.0 0.0–22.7 Gga_rs14187077 Gga_rs14690641 0.018 NS 0.272 (3)
ILL/BW 21.0 0.0–34.3 Gga_rs14187077 Gga_rs16688369 0.027 NS 0.193 (4)
GW/FI 33.0 25.0–37.0 Gga_rs16688631 GgaluGA186231 0.046 NS 0.264 (2)
DUL/FI 44.0 38.0–50.0 GgaluGA186231 GgaluGA186550 0.032 NS 0.290 (3)
AFY 58.0 47.0–61.0 GgaluGA186448 Gga_rs14741743 0.045 NS 0.244 (2)
23 BW14 11.0 6.8–12.5 GgaluGA187410 Gga_rs14289024 0.050 NS 0.205 (4)
25 ILW 54.0 45.0–62.0 GgaluGA194347 Gga_rs16048502 0.040 NS 0.181 (4)
26 DUW 20.0 6.4–23.4 Gga_rs15467187 Gga_rs13606162 0.003 NS 0.216 (3)
ILL/BW 37.0 30.3–40.0 Gga_rs13606421 Gga_rs16204548 0.005 NS 0.222 (2)
JEL/BW 37.0 34.0–40.0 Gga_rs15235010 Gga_rs14300958 0.050 NS 0.270 (2)
27 PRW/FI 50.0 45.5–54.0 Gga_rs15243050 GgaluGA200602 0.035 NS 0.200 (4)
Zf INL/FI 7.0 4.0–9.0 Gga_rs15993613 GgaluGA346550 0.034 NS 0.382 (3)F
Zm JEL 33.0 26.0–47.0 Gga_rs15243050 Gga_rs14757928 0.010 0.130 0.331 (4)
Zf JEL 80.0 73.0–89.0 Gga_rs13734017 Gga_rs14760912 0.004 0.060 0.323 (5)
Zf PRW/GW 82.0 65.0–104.0 GgaluGA349288 Gga_rs16106986 0.008 0.100 0.348 (3)
Zf JEL/BW 207.0 203.0–213.0 Gga_rs14776035 Gga_rs16125407 0.010 0.130 0.284 (4)
Zm BW0 210.5 207.0–217.0 Gga_rs29004800 Gga_rs16126655 0.042 NS 0.844 (3)
Zf DUW 221.0 216.0–224.0 Gga_rs16126120 Gga_rs15992576 0.006 0.080 0.343 (5)
Zf DUL/DUW 222.0 219.0–224.0 Gga_rs14781920 Gga_rs15992576 0.004 0.060 0.317 (5)
Zm DUL/BW 230.0 228.4–231.0 Gga_rs15990597 Gga_rs15168799 0.009 0.120 0.304 (4)

aDUW, JEW, ILW, INW: duodenum, jejunum, ileum, and small intestine weight at 23 days; DUW/BW, JEW/BW, ILW/BW, INW/BW: duodenum, jejunum, ileum, and small intestine weight at 23 days relative to body weight at 23 days; DUW/FI, JEW/FI, ILW/FI, INW/FI: duodenum, jejunum, ileum, and small intestine weight at 23 days relative to feed intake between 9 and 23 days; DUL, JEL, ILL, INL: duodenum, jejunum, ileum, and small intestine length at 23 days; DUL/BL, JEL/BL, ILL/BL, INL/BL: duodenum, jejunum, ileum, and small intestine length at 23 days relative to body weight at 23 days; DUL/FI, JEL/FI, ILL/FI, INL/FI: duodenum, jejunum, ileum, and small intestine length at 23 days relative to feed intake between 9 and 23 days; DUD, JED, ILD, IND: duodenum, jejunum, ileum, and small intestine density at 23 days; PHG, PHJ: pH in the content of gizzard and jejunum; BWX: body weight at X days

b1-LOD-drop off confidence interval (lower and upper boundaries, in cM)

cNS: P > 0.150 at the genome wide level

dQTL effect as a proportion of the phenotypic standard deviation of trait

eNumber of F1 sire families heterozygous for the QTL (P < 0.05, Student test)

fQTL located at the telomere

gF: QTL fixed in F1 sire families in which it is significant