Table 1.
List of proteins identified using the OGE method in order of abundance as indicated by the total spectrum count (TSC). The percent composition (% comp) was calculated as the percent of the summed normalized TSC’s (see text). Proteins were considered identified if at least two identified peptides were matched to only that protein.
| Protein ID | MW | Accession | TSC | %Comp. |
|---|---|---|---|---|
| Albumin | 69321 | P02768 | 1911 | 22.63 |
| Transthyretin | 15877 | P02766 | 191 | 9.87 |
| Hypothetical protein LOC651928 | 26229 | 946295 | 176 | 5.51 |
| Hypothetical protein LOC649897 | 22059 | Q49AS2 | 102 | 3.80 |
| Cystatin C | 15789 | P01034 | 68 | 3.54 |
| Transferrin | 77000 | P02787 | 303 | 3.23 |
| Anti-RhD monoclonal T125 gamma1 heavy chain | 52253 | Q5EFE5 | 196 | 3.08 |
| Alpha-1 antitrypsin | 46707 | P01009 | 163 | 2.86 |
| Prostaglandin D2-synthase | 21015 | Q5SQ09 | 64 | 2.50 |
| PREDICTED: similar to Ig gamma-3 chain C region | 18069 | 947052 | 51 | 2.32 |
| Apolipoprotein A-II preproprotein | 11167 | P02652 | 27 | 1.98 |
| Apolipoprotein A-I preproprotein | 30758 | P02647 | 70 | 1.87 |
| Apolipoprotein E | 36131 | P02649 | 71 | 1.61 |
| PREDICTED: similar to Ig alpha-1 chain C region isoform 1 | 28490 | Q8NCL6 | 54 | 1.56 |
| Alpha 2 globin | 15247 | Q86YQ5 | 26 | 1.40 |
| Beta globin | 15988 | P68871 | 25 | 1.28 |
| Vitamin D-binding protein | 52883 | P02774 | 80 | 1.24 |
| Apolipoprotein D | 21261 | P05090 | 29 | 1.12 |
| Haptoglobin | 45176 | P00738 | 56 | 1.02 |
| Syntaxin binding protein 2 | 66396 | 15833 | 81 | 1.00 |
| Haptoglobin-related protein | 39004 | P00739 | 44 | 0.93 |
| Hemopexin | 51643 | P02790 | 57 | 0.91 |
| Orosomucoid 1 | 23496 | P02763 | 24 | 0.84 |
| Clusterin isoform 1 | 57795 | Q96AJ1 | 59 | 0.84 |
| Delta globin | 16045 | P02042 | 15 | 0.77 |
| Serpin peptidase inhibitor, clade A, member 3 | 47620 | P36955 | 44 | 0.76 |
| PREDICTED: similar to Ig gamma-4 chain C region . | 47414 | P01861 | 39 | 0.68 |
| PREDICTED: similar to Ig kappa chain V-III region HAH | 16578 | 642113 | 13 | 0.64 |
| Beta-2-microglobulin | 13705 | Q9UM88 | 10 | 0.60 |
| Apolipoprotein A-IV precursor | 45344 | P06727 | 32 | 0.58 |
| Complement component 4A preproprotein | 192663 | Q5INX2 | 117 | 0.50 |
| Complement component 3 | 187045 | Q6LDJ0 | 110 | 0.48 |
| Alpha-2-glycoprotein 1, zinc | 34237 | P02765 | 20 | 0.48 |
| Orosomucoid 2 | 23587 | Q5T538 | 13 | 0.45 |
| Angiotensinogen preproprotein | 53120 | P01019 ACS | 29 | 0.45 |
| Alpha 1B-glycoprotein | 54219 | P04217 | 28 | 0.42 |
| PREDICTED: similar to Ig gamma-1 chain C region | 64280 | 652050 | 32 | 0.41 |
| Serine (or cysteine) proteinase inhibitor, clade F | 46283 | Q4R6H4 | 23 | 0.41 |
| Alpha-2-macroglobulin | 163188 | P01023 | 81 | 0.41 |
| A-gamma globin | 16118 | P69891 | 8 | 0.41 |
| Apolipoprotein H | 38286 | P02749 | 19 | 0.41 |
| Insulin-like growth factor binding protein 6 | 25306 | P24592 | 12 | 0.39 |
| Kininogen 1 | 47852 | P01042 | 22 | 0.38 |
| CD14 antigen precursor | 40050 | P08571 | 18 | 0.37 |
| Retinol-binding protein 4, plasma | 22995 | P02753 | 10 | 0.36 |
| Ceruloplasmin (ferroxidase) | 122127 | P00450 | 53 | 0.36 |
| PREDICTED: similar to Ig kappa chain V-II region Cum | 13912 | P01614 | 6 | 0.35 |
| C-type lectin domain family 3, member B | 22552 | P05452 | 9 | 0.33 |
| Gelsolin isoform B | 80590 | P06396 | 32 | 0.33 |
| Pancreatic ribonuclease | 17632 | P07998 | 7 | 0.33 |
| Alpha-2-HS-glycoprotein | 39299 | P02765 | 15 | 0.31 |
| Family with sequence similarity 3, member C | 24664 | Q5HY75 | 9 | 0.30 |
| Actin, gamma 1 propeptide | 41765 | P63261 | 15 | 0.29 |
| PREDICTED: similar to Ig gamma-2 chain C region | 39968 | P01859 | 14 | 0.29 |
| Kallikrein 6 isoform B | 15045 | Q92876 | 5 | 0.27 |
| EGF-containing fibulin-like extracellular matrix 1 For | 54604 | Q12805 | 18 | 0.27 |
| Complement component 1 inhibitor precursor | 55119 | 060860 | 18 | 0.27 |
| Synovial sarcoma, X breakpoint 4B isoform a | 21844 | O60224 | 7 | 0.26 |
| Complement factor B preproprotein | 85478 | P00751 | 27 | 0.26 |
| Dickkopf homolog 3 | 38365 | Q4R417 | 12 | 0.26 |
| Lysozyme | 16526 | Q8N1E2 | 5 | 0.25 |
| Proprotein convertase subtilisin/kexin type 1 inhibitor | 27355 | P29120 | 8 | 0.24 |
| Galectin 3 binding protein | 65289 | P17931 | 19 | 0.24 |
| Serine (or cysteine) proteinase inhibitor, clade C | 52568 | P32661 | 15 | 0.23 |
| Secreted phosphoprotein 1 isoform A | 35401 | Q4W597 | 10 | 0.23 |
| Alpha-1-microglobulin/bikunin | 38973 | Q5TBD7 | 11 | 0.23 |
| PREDICTED: hypothetical protein XP_939253 | 28963 | 647006 | 8 | 0.23 |
| Chitotriosidase | 51648 | QHVGC6 | 14 | 0.22 |
| Insulin-like growth factor binding protein 7 | 29111 | Q16270 | 7 | 0.20 |
| Complement factor H isoform b | 50974 | P08603 | 11 | 0.18 |
| Amyloid precursor-like protein 1 isoform 2 | 72131 | P51693 | 15 | 0.17 |
| Serine (or cysteine) proteinase inhibitor, clade F | 46283 | Q4R6H4 | 9 | 0.16 |
| Secretogranin III | 52972 | Q8WXD2 | 10 | 0.15 |
| PREDICTED: similar to FXYD domain-containing ion | 10640 | A8K0R4 | 2 | 0.15 |
| Complement component 1, q subcomponent, B chain | 26704 | Q5T960 | 5 | 0.15 |
| PREDICTED: similar to Ig heavy chain V-III region | 16286 | 646057 - | 3 | 0.15 |
| VGF nerve growth factor inducible | 67217 | Q9UDW8 | 12 | 0.15 |
| Osteoglycin preproprotein | 33900 | P20774 | 6 | 0.15 |
| Autotaxin isoform 2 preproprotein | 98929 | 1035181 | 17 | 0.14 |
| PREDICTED: similar to peptidylprolyl isomerase A | 18660 | P62937 | 3 | 0.13 |
| Complement component 7 | 93457 | Q8TCS7 | 14 | 0.12 |
| SPARC-like 1 | 75201 | Q14515 ACS | 11 | 0.12 |
| Phospholipid transfer protein isoform a | 54704 | Q53H91 | 8 | 0.12 |
| Afamin | 69024 | P43652 | 10 | 0.12 |
| PREDICTED: similar to Ig heavy chain V region 102 | 13898 | P01743 | 2 | 0.12 |
| Insulin-like growth factor binding protein 2 | 35114 | P18065 | 5 | 0.12 |
| Carnosinase 1 | 56656 | Q96KN2 | 8 | 0.12 |
| Fibrinogen, gamma chain isoform gamma-B | 51478 | 068656 | 7 | 0.11 |
| Complement factor H isoform A | 138978* | P08603 | 18 | 0.11 |
| Vitronectin | 54271 | P04004 | 7 | 0.11 |
| Peroxiredoxin 2 isoform b | 15979 | Q6P390 | 2 | 0.10 |
| Cell adhesion molecule with homology to L1CAM | 136612 | Q59FY0 | 17 | 0.10 |
| Superoxide dismutase 3, extracellular | 25864 | O14618 | 3 | 0.10 |
| Complement component 9 | 63132 | Q9UG14 | 7 | 0.09 |
| Plasminogen For | 90510 | P06733 | 10 | 0.09 |
| PREDICTED: similar to actin-like protein | 46174 | O96019 | 5 | 0.09 |
| Fibulin 1 isoform B | 65427 | Q59G97 | 7 | 0.09 |
| PREDICTED: similar to Ubiquitin carboxyl-terminal | 113359 | Q9H9C5 | 12 | 0.09 |
| Leucine-rich alpha-2-glycoprotein 1 | 38154 | P02750 | 4 | 0.09 |
| DJ-1 protein | 19878 | Q99497 | 2 | 0.08 |
| Hypothetical protein LOC79441 | 69606 | Q725Q5 | 7 | 0.08 |
| Complement component 1, r subcomponent | 80147 | Q53HT9 | 8 | 0.08 |
| Hypothetical protein LOC160518 | 140512 | Q6NUJ0 | 14 | 0.08 |
| PREDICTED: similar to Prostate, ovary, testis alpha-N- acetylglucosaminidase |
121366 | P54802 | 12 | 0.08 |
| Fibronectin 1 isoform 3 preproprotein | 259061 | P02751 | 25 | 0.08 |
| Alpha 1 actin | 42023 | P68133 | 4 | 0.08 |
| Chitinase 3-like 1 | 42586 | P36222 | 4 | 0.08 |
| Alpha-2-plasmin inhibitor | 54561 | P08697 | 5 | 0.08 |
| Fibrinogen, beta chain preprotein | 55892 | P02765 | 5 | 0.07 |
| Tissue inhibitor of metalloproteinase 1 | 23155 | P01033 | 2 | 0.07 |
| Coagulation factor II | 69992 | Q53H04 | 6 | 0.07 |
| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 | 47088 | Q43505 | 4 | 0.07 |
| Complement component 1, s subcomponent | 76634 | Q53HU9 | 6 | 0.06 |
| Fructose-bisphosphate aldolase C | 39431 | P09972 | 3 | 0.06 |
| Kallikrein 6 isoform A preproprotein | 26838 | Q6T774 | 2 | 0.06 |
| Peptidoglycan recognition protein L | 67927 | Q96PD5 | 5 | 0.06 |
| Heparin cofactor II | 57034 | P05546 | 4 | 0.06 |
| Microfibrillar-associated protein 4 | 28629 | A8KAJ1 | 2 | 0.06 |
| Inter-alpha (globulin) inhibitor H4 | 103293 | Q59FS1 | 7 | 0.06 |
| Histidine-rich glycoprotein | 59540 | P04196 | 4 | 0.06 |
| Inter-alpha globulin inhibitor H2 polypeptide | 106396 | A2RTY6 | 7 | 0.05 |
| Nel-like 2 | 91284 | Q99435 | 6 | 0.05 |
| PREDICTED: similar to Fc fragment of IgG binding | 30792 | 945689 | 2 | 0.05 |
| PREDICTED: similar to Ceruloplasmin (Ferroxidase) | 32078 | 877964 | 2 | 0.05 |
| Neuronal cell adhesion molecule isoform B | 130964 | A4D0S3 | 8 | 0.05 |
| Limbic system-associated membrane protein | 37370 | Q13449 | 2 | 0.04 |
| Fibulin 1 isoform D | 77190 | Q96K89 | 4 | 0.04 |
| Intercellular adhesion molecule 5 | 97185 | Q9UMF0 | 5 | 0.04 |
| Aldolase A | 39395 | P04075 | 2 | 0.04 |
| UNC13 (C. elegans)-like | 180529 | O14795 ACS | 9 | 0.04 |
| ATP-binding cassette, sub-family E, member 1 | 67271 | P61221 | 3 | 0.04 |
| Neogenin homolog 1 | 159859 | Q59FP8 | 7 | 0.04 |
| Chromogranin A | 50657 | P10645 | 2 | 0.03 |
| Inter-alpha (globulin) inhibitor H1 | 101338 | P19827 | 4 | 0.03 |
| Hypothetical protein LOC440307 | 53187 | A6NNM8 | 2 | 0.03 |
| Hypothetical protein LOC51244 | 53924 | Q6P1I3 | 2 | 0.03 |
| Hypothetical protein LOC9816 | 170460 | Q14146 | 6 | 0.03 |
| Amyloid beta A4 protein precursor, isoform A | 86888 | P05067 | 3 | 0.03 |
| MutS homolog 5 isoform c | 92816 | O46196 | 3 | 0.03 |
| Complement component 4 binding protein, alpha chain | 66989 | Q5VVQ8 | 2 | 0.02 |
| Coagulation factor XII | 67774 | P00748 | 2 | 0.02 |
| Integrator complex subunit 8 | 113015 | Q75QN2 | 3 | 0.02 |
| Chromogranin B | 78199 | P05060 | 2 | 0.02 |
| Carbamoylphosphate synthetase 2 | 242827 | P27708 | 6 | 0.02 |
| Complement component 2 | 83214 | A2AAQ4 | 2 | 0.02 |
| Apolipoprotein B | 515209 | P04114 | 12 | 0.02 |
| Tuberous sclerosis 2 isoform 3 | 195776 | P49815 | 4 | 0.02 |
| Trinucleotide repeat containing 15 | 149977 | Q6Y7W6 | 3 | 0.02 |
| Calsyntenin 1 isoform 1 | 109723 | Q94985 | 2 | 0.01 |
| Ephrin receptor EphA4 | 109789 | P54764 | 2 | 0.01 |
| Contactin 1 isoform 1 For | 113249 | Q12860 | 2 | 0.01 |
| Calcium channel, voltage-dependent, alpha 2/delta | 123105 | Q17R45 | 2 | 0.01 |
| Fc fragment of IgG binding protein | 571719 | P01876 | 9 | 0.01 |
| Myosin VIIA | 254242 | Q13402 | 3 | 0.01 |
| Complement component 4B preproprotein | 192629 | Q6U2E9 | 2 | 0.01 |
| Thyroid hormone receptor interactor 11 | 227498 | Q15643 | 2 | 0.01 |