Table 3.

Summary of QTL observed for vegetative and oil yield traits in the mapping population G51 × CV

Trait	Observations (n)	Linkage group	Position (cM)	LODa	PVE	Bayes 95 % CI (cM)	Beneficial allele	Effectb	QTL plot Additional file 5:	Effect plot Additional file 6:
Height (567 days)	144	4	7.05 (G37)	3.03*	9.2	1.0–13.0	Heterozygous	OD	Fig. S2a	Fig. S3a
Height (763 days)	143	4	8.0	3.19*	7.0	3.34–25.73	Heterozygous	OD	Fig. S2b	Fig. S3b
		8	36.0	3.18*	7.0	0.0–53.0	G51	Dom		Fig. S3c
Stem diameter (567 days)	144	4	7.05 (G37)	4.35***	14.9	5.0–11.21	Heterozygous	OD	Fig. S2c	Fig. S3d
		5	41.1 (G123)	3.23*	8.5	26.0–44.02	CV	Dom		Fig. S3e
Stem diameter (763 days)	143	7	13.0	4.31***	10.2	6.0–22.0	G51	Dom	Fig. S2d	Fig. S3f
		4	7.05 (G37)	3.70**	8.9	0.67–10.0	Heterozygous	OD		Fig. S3g
Branching (763 days)	143	1	25.0	3.68**	11.2	0.0–25.09	CV	Dom	Fig. S2e	Fig. S3h
Total seeds, year 3	140	10	29.0	3.81**	11.7	0.0–32.2	CV	Dom	Fig. S2f	Fig. S3i
Oil content, year 2	142	4	32.0	4.73***	13.3	2.0–34.3	G51	Dom	Fig. S2g	Fig. S3j
		10	31.0 (JCT27)	4.31***	12.1	4.0–32.2	G51	Dom		Fig. S3k
Oil content, year 3a	132	4	45.5	3.27**	10.8	0.0–57.1	G51	Dom	Fig. S2h	Fig. S3l
Oil content, year 3b	112	10	32.0	3.05*	11.8	1.0–32.2	G51	Dom	Fig. S2i	Fig. S3m
100-seed weight, year 2	142	4	7.05 (G37)	7.90***	22.6	1.3–15.0	G51	Dom	Fig. S2j	Fig. S3n
100-seed weight, year 3a	132	4	1.34 (1407326|12327601)	5.04***	16.1	0.0–19.0	G51	Dom	Fig. S2k	Fig. S3o
100-seed weight, year 3b	112	4	4.0	3.44**	13.2	0.0–52	G51	Dom	Fig. S2l	Fig. S3p

^aThe LOD significance thresholds are *** p = 0.01, ** p = 0.05 or * p = 0.10

^bEffects are overdominant (OD), additive (Add) or dominant (Dom)