Table 2. Number of host genes differentially expressed between mock and Py59RA infected samples.

	12 hours	18 hours	24 hours	36 hours
Upregulated	0	6	12	359
Downregulated	0	7	19	857
Total	0	13	31	1,217

The number of host transcripts that changed more than 1.5 fold across all three biological replicates was determined using Cuffdiff. Only genes with expression >1 fpkm were counted.