Table 1.
Overview of deleted chromosome regions.
Start and end points of deleted chromosome regions are according to NCBI37/mm9. Size is displayed in kb.
| Sphere |
24 h TGF-ß |
12 h FCS |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Start | End | log2 | Size | Start | End | log2 | Size | Start | End | log2 | Size | |||
| chr1 | 3019999 | 9259999 | − 0.11308 | 6240 | ||||||||||
| chr1 | 10419999 | 12539999 | − 0.16881 | 2120 | ||||||||||
| chr1 | 21459999 | 33339999 | − 0.12453 | 11,880 | ||||||||||
| chr1 | 47059999 | 51179999 | − 0.20953 | 4120 | ||||||||||
| chr1 | 67859999 | 68979999 | − 0.20877 | 1120 | ||||||||||
| chr1 | 95859999 | 106179999 | − 0.11556 | 10,320 | ||||||||||
| chr1 | 108899999 | 120099999 | − 0.13136 | 11,200 | ||||||||||
| chr1 | 110459999 | 112459999 | − 0.15437 | 2000 | ||||||||||
| chr1 | 125099999 | 125779999 | − 0.1133 | 680 | ||||||||||
| chr1 | 141739999 | 151499999 | − 0.12807 | 9760 | ||||||||||
| chr1 | 157499999 | 166019999 | − 0.11672 | 8520 | chr1 | 157699999 | 164339999 | − 0.11251 | 6640 | |||||
| chr1 | 179699999 | 180099999 | − 0.17032 | 400 | ||||||||||
| chr2 | 39299999 | 49379999 | − 0.11759 | 10,080 | ||||||||||
| chr2 | 80899999 | 83139999 | − 0.16313 | 2240 | ||||||||||
| chr2 | 85619999 | 89979999 | − 0.1151 | 4360 | chr2 | 85539999 | 89979999 | − 0.19832 | 4440 | |||||
| chr2 | 94819999 | 101179999 | − 0.10144 | 6360 | chr2 | 94419999 | 101179999 | − 0.14893 | 6760 | |||||
| chr2 | 140259999 | 140739999 | − 0.10916 | 480 | ||||||||||
| chr2 | 174619999 | 176979999 | − 0.10819 | 2360 | chr2 | 174539999 | 176979999 | − 0.10409 | 2440 | |||||
| chr3 | 3179999 | 7819999 | − 0.16459 | 4640 | ||||||||||
| chr3 | 10779999 | 15219999 | − 0.10217 | 4440 | chr3 | 10699999 | 14179999 | − 0.21013 | 3480 | |||||
| chr3 | 15259999 | 15819999 | − 0.25966 | 560 | chr3 | 15339999 | 18379999 | − 0.18784 | 3040 | chr3 | 15459999 | 15779999 | − 0.2969 | 320 |
| chr3 | 23219999 | 26019999 | − 0.12403 | 2800 | ||||||||||
| chr3 | 41659999 | 48699999 | − 0.20394 | 7040 | ||||||||||
| chr3 | 47419999 | 48019999 | − 0.20803 | 600 | chr3 | 48739999 | 50819999 | − 0.10307 | 2080 | |||||
| chr3 | 66659999 | 67219999 | − 0.14445 | 560 | ||||||||||
| chr3 | 69859999 | 71299999 | − 0.14 | 1440 | ||||||||||
| chr3 | 71339999 | 73539999 | − 0.1502 | 2200 | chr3 | 71339999 | 72859999 | − 0.24188 | 1520 | |||||
| chr3 | 72899999 | 75019999 | − 0.12964 | 2120 | ||||||||||
| chr3 | 76179999 | 78579999 | − 0.10363 | 2400 | ||||||||||
| chr3 | 80059999 | 81099999 | − 0.14237 | 1040 | chr3 | 80659999 | 81059999 | − 0.20763 | 400 | |||||
| chr3 | 93699999 | 94059999 | − 0.18368 | 360 | chr3 | 93699999 | 94059999 | − 0.16031 | 360 | |||||
| chr3 | 110219999 | 115099999 | − 0.16927 | 4880 | ||||||||||
| chr3 | 116859999 | 120779999 | − 0.1109 | 3920 | ||||||||||
| chr3 | 123499999 | 125779999 | − 0.2668 | 2280 | chr3 | 123339999 | 125779999 | − 0.35956 | 2440 | chr3 | 123059999 | 127819999 | − 0.16916 | 4760 |
| chr3 | 125819999 | 127739999 | − 0.16144 | 1920 | chr3 | 125819999 | 128939999 | − 0.16294 | 3120 | |||||
| chr3 | 131419999 | 132379999 | − 0.13963 | 960 | ||||||||||
| chr3 | 140139999 | 140899999 | − 0.18969 | 760 | ||||||||||
| chr3 | 149859999 | 151299999 | − 0.18356 | 1440 | ||||||||||
| chr3 | 154499999 | 159578619 | − 0.10621 | 5079 | ||||||||||
| chr4 | 12379999 | 32099999 | − 0.13785 | 19,720 | ||||||||||
| chr4 | 35779999 | 39859999 | − 0.20166 | 4080 | ||||||||||
| chr4 | 64579999 | 75579999 | − 0.11545 | 11,000 | ||||||||||
| chr4 | 75659999 | 80779999 | − 0.2069 | 5120 | chr4 | 75619999 | 80779999 | − 0.2917 | 5160 | chr4 | 75579999 | 78339999 | − 0.19677 | 2760 |
| chr4 | 89259999 | 94339999 | − 0.13013 | 5080 | ||||||||||
| chr5 | 5939999 | 7859999 | − 0.15729 | 1920 | ||||||||||
| chr5 | 11859999 | 19539999 | − 0.12821 | 7680 | ||||||||||
| chr5 | 54859999 | 61859999 | − 0.20136 | 7000 | ||||||||||
| chr5 | 67699999 | 72699999 | − 0.13854 | 5000 | ||||||||||
| chr5 | 78299999 | 91059999 | − 0.10839 | 12,760 | chr5 | 81459999 | 81739999 | − 0.14919 | 280 | |||||
| chr5 | 146259999 | 146579999 | − 0.10129 | 320 | ||||||||||
| chr6 | 41499999 | 47339999 | − 0.10686 | 5840 | chr6 | 41539999 | 47099999 | − 0.16256 | 5560 | |||||
| chr6 | 55739999 | 66419999 | − 0.10699 | 10,680 | ||||||||||
| chr6 | 73379999 | 81459999 | − 0.11413 | 8080 | ||||||||||
| chr6 | 103779999 | 112019999 | − 0.1065 | 8240 | ||||||||||
| chr6 | 138299999 | 140059999 | − 0.14334 | 1760 | chr6 | 138379999 | 140059999 | − 0.22473 | 1680 | |||||
| chr7 | 56899999 | 70659999 | − 0.10699 | 13,760 | ||||||||||
| chr7 | 75539999 | 79379999 | − 0.11891 | 3840 | ||||||||||
| chr7 | 91779999 | 103339999 | − 0.10018 | 11,560 | ||||||||||
| chr7 | 10699999 | 12139999 | − 0.24888 | 1440 | ||||||||||
| chr7 | 110659999 | 111699999 | − 0.23809 | 1040 | chr7 | 110619999 | 111379999 | − 0.20134 | 760 | |||||
| chr8 | 4579999 | 9659999 | − 0.11752 | 5080 | ||||||||||
| chr8 | 99539999 | 106019999 | − 0.10809 | 6480 | ||||||||||
| chr8 | 29979999 | 34539999 | − 0.13338 | 4560 | ||||||||||
| chr8 | 49459999 | 55619999 | − 0.16084 | 6160 | ||||||||||
| chr8 | 98739999 | 106419999 | − 0.17182 | 7680 | ||||||||||
| chr9 | 3139999 | 7299999 | − 0.10507 | 4160 | ||||||||||
| chr9 | 10419999 | 12939999 | − 0.15382 | 2520 | ||||||||||
| chr9 | 16739999 | 20259999 | − 0.10813 | 3520 | ||||||||||
| chr9 | 33219999 | 34019999 | − 0.11795 | 800 | ||||||||||
| chr9 | 35659999 | 35939999 | − 0.21324 | 280 | chr9 | 35659999 | 36299999 | − 0.16454 | 640 | chr9 | 35659999 | 36059999 | − 0.16676 | 400 |
| chr9 | 37699999 | 38899999 | − 0.10023 | 1200 | chr9 | 37419999 | 39979999 | − 0.10149 | 2560 | |||||
| chr9 | 71699999 | 72019999 | − 0.1087 | 320 | ||||||||||
| chr9 | 115059999 | 115619999 | − 0.10853 | 560 | ||||||||||
| chr10 | 15059999 | 16899999 | − 0.1919 | 1840 | ||||||||||
| chr10 | 35579999 | 35939999 | − 0.17695 | 360 | chr10 | 26739999 | 38059999 | − 0.11928 | 11,320 | |||||
| chr10 | 45899999 | 51019999 | − 0.12617 | 5120 | chr10 | 45899999 | 49499999 | − 0.20934 | 3600 | chr10 | 47739999 | 49099999 | − 0.13582 | 1360 |
| chr10 | 63059999 | 65899999 | − 0.11266 | 2840 | ||||||||||
| chr10 | 71099999 | 74299999 | − 0.10106 | 3200 | ||||||||||
| chr10 | 100819999 | 105099999 | − 0.16547 | 4280 | chr10 | 100819999 | 105099999 | − 0.22175 | 4280 | chr10 | 101059999 | 104739999 | − 0.11145 | 3680 |
| chr10 | 111619999 | 114339999 | − 0.19567 | 2720 | ||||||||||
| chr10 | 122579999 | 126139999 | − 0.11643 | 3560 | ||||||||||
| chr10 | 128539999 | 129975647 | − 0.10464 | 1436 | chr10 | 128539999 | 129975647 | − 0.14084 | 1436 | |||||
| chr11 | 8979999 | 18619999 | − 0.11164 | 9640 | chr11 | 17579999 | 18619999 | − 0.10657 | 1040 | |||||
| chr11 | 36019999 | 42459999 | − 0.11313 | 6440 | chr11 | 36459999 | 42459999 | − 0.19152 | 6000 | |||||
| chr11 | 90499999 | 93299999 | − 0.14477 | 2800 | ||||||||||
| chr12 | 89939999 | 99619999 | − 0.12512 | 9680 | ||||||||||
| chr12 | 114979999 | 116219999 | − 0.10697 | 1240 | ||||||||||
| chr13 | 76539999 | 90659999 | − 0.12234 | 14,120 | ||||||||||
| chr13 | 115939999 | 120282113 | − 0.12049 | 4342 | ||||||||||
| chr14 | 49819999 | 53379999 | − 0.12933 | 3560 | chr14 | 50499999 | 52099999 | − 0.12137 | 1600 | |||||
| chr14 | 52379999 | 53419999 | − 0.10299 | 1040 | ||||||||||
| chr14 | 76859999 | 78259999 | − 0.10653 | 1400 | chr14 | 76939999 | 125175837 | − 0.15227 | 48,236 | |||||
| chr14 | 88619999 | 95699999 | − 0.17732 | 7080 | chr14 | 80339999 | 98619999 | − 0.31002 | 18,280 | |||||
| chr14 | 98659999 | 106899999 | − 0.14224 | 8240 | ||||||||||
| chr14 | 106939999 | 118059999 | − 0.26608 | 11,120 | ||||||||||
| chr14 | 118099999 | 125175837 | − 0.13545 | 7076 | ||||||||||
| chr15 | 9419999 | 10299999 | − 0.13815 | 880 | ||||||||||
| chr15 | 13459999 | 23819999 | − 0.1377 | 10,360 | chr15 | 13339999 | 24459999 | − 0.20317 | 11,120 | |||||
| 6360 | chr15 | 13499999 | 14979999 | − 0.10807 | 1480 | |||||||||
| chr15 | 46139999 | 47259999 | − 0.15127 | 1120 | chr15 | 44659999 | 51019999 | − 0.17027 | chr15 | 19699999 | 22619999 | − 0.10222 | 2920 | |
| chr15 | 47419999 | 51059999 | − 0.12808 | 3640 | ||||||||||
| chr15 | 89459999 | 90219999 | − 0.12766 | 760 | ||||||||||
| chr16 | 59059999 | 89699999 | − 0.13622 | 30,640 | ||||||||||
| chr17 | 17499999 | 22579999 | − 0.11022 | 5080 | chr17 | 18299999 | 20899999 | − 0.2772 | 2600 | |||||
| chr17 | 37259999 | 42659999 | − 0.17895 | 5400 | ||||||||||
| chr17 | 50899999 | 56019999 | − 0.11015 | 5120 | ||||||||||
| chr17 | 57539999 | 62859999 | − 0.14589 | 5320 | ||||||||||
| chr17 | 76139999 | 78259999 | − 0.13494 | 2120 | chr17 | 76139999 | 78299999 | − 0.17557 | 2160 | |||||
| chr17 | 81499999 | 83219999 | − 0.10341 | 1720 | ||||||||||
| chr17 | 89499999 | 95255954 | − 0.10669 | 5756 | chr17 | 89259999 | 95255954 | − 0.15303 | 5996 | |||||
| chr18 | 16939999 | 19899999 | − 0.11972 | 2960 | chr18 | 16979999 | 19779999 | − 0.1813 | 2800 | chr18 | 7899999 | 8339999 | − 0.13658 | 440 |
| chr18 | 26139999 | 31459999 | − 0.11968 | 5320 | chr18 | 26219999 | 31379999 | − 0.21126 | 5160 | |||||
| chr18 | 51059999 | 52299999 | − 0.14649 | 1240 | chr18 | 50739999 | 52659999 | − 0.19077 | 1920 | chr18 | 51659999 | 52099999 | − 0.12795 | 440 |
| chr18 | 70659999 | 73179999 | − 0.1304 | 2520 | ||||||||||
| chr18 | 75979999 | 76259999 | − 0.16726 | 280 | chr18 | 75779999 | 76499999 | − 0.11312 | 720 | |||||
| chr18 | 85659999 | 90459999 | − 0.1178 | 4800 | chr18 | 85299999 | 90765552 | − 0.13801 | 5466 | |||||
| chr19 | 47779999 | 52739999 | − 0.12561 | 4960 | ||||||||||