Table 3.

Alignment statistics indicative of reads aligned to the assembled transcriptome as a result of standard parameters used in Trinity Assembler.

Sample ID	Aligned reads	Unaligned reads
SRR1238087	34,972,638 (73.36%)	12,551,188 (26.33%)
SRR1238089	36,915,066 (74.78%)	12,448,020 (25.22%)
SRR1238090	37,346,712 (74.77%)	12,604,982 (25.23%)
SRR1239328	33,406,742 (71.86%)	13,082,908 (28.14%)
SRR1239329	32,489,850 (62.62%)	19,396,554 (37.38%)
SRR1239330	23,811,380 (69.57%)	10,417,292 (30.43%)
SRR1239331	53,009,538 (75.23%)	17,455,598 (24.77%)
SRR1239333	25,688,662 (73.93%)	9,058,906 (26.07%)
SRR1239334	45,313,564 (73.1%)	16,678,580 (26.9%)
SRR1239335	34,384,314 (75.48%)	11,171,194 (24.52%)