Table 4.
eQTL of six most consistently replicated regions for asthma susceptibility
SNP | Gene | Chr | Location | Distance to Gene | Minor Allele | MAF | GSDMB | ORMDL3 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||||||
BEC | BAL | BEC | BAL | |||||||||||
| ||||||||||||||
Beta* | P-value (adjusted) | Beta* | P-value (adjusted) | Beta* | P-value | Beta* | P-value | |||||||
rs8067378 | GSDMB | 17 | 3′ | −9500 | G | 0.50 | −0.52 | 1.3x10−4 (1.9x10−3) | −0.35 | 0.04 | −0.05 | 0.74 | 0.11 | 0.52 |
rs2305480 | GSDMB | 17 | coding | 96_42 | T | 0.35 | −0.45 | 4.4x10−4 (4.7x10−3) | −0.23 | 0.12 | 0.15 | 0.27 | −0.05 | 0.75 |
rs7216389 | GSDMB | 17 | intron | −1199 | C | 0.39 | −0.43 | 1.1x10−3 (0.01) | −0.24 | 0.10 | 0.07 | 0.62 | 0.00 | 0.99 |
| ||||||||||||||
TSLP | WDR36 | |||||||||||||
| ||||||||||||||
rs1837253 | TSLP | 5 | 5′ | −5518 | T | 0.26 | −0.24 | 0.15 | −0.03 | 0.86 | −0.07 | 0.69 | 0.05 | 0.80 |
rs3806932 | TSLP | 5 | 5′ | −1715 | G | 0.50 | −0.39 | 2.3x10−3 (0.05) | −0.85 | 7.9x10−11 (1.0x10−4) | −0.07 | 0.61 | −0.04 | 0.76 |
rs3806933 | TSLP | 5 | 5′ | −648 | T | 0.36 | −0.43 | 7.8x10−4 (0.02) | −0.82 | 1.5x10−9 (1.0x10−4) | −0.06 | 0.66 | −0.01 | 0.94 |
rs2289276 | TSLP | 5 | 5UTR | 117_81 | T | 0.24 | −0.51 | 5.2x10−4 (0.01) | −0.66 | 2.7x10−5 (8.0x10−4) | −0.21 | 0.15 | −0.09 | 0.57 |
rs2416257 | WDR36 | 5 | intron | −798 | A | 0.12 | −0.17 | 0.44 | −0.81 | 5.5x10−4 (0.02) | 0.29 | 0.20 | 0.20 | 0.41 |
| ||||||||||||||
IL13 | RAD50 | |||||||||||||
| ||||||||||||||
rs2244012 | RAD50 | 5 | intron | −6166 | C | 0.38 | −0.21 | 0.11 | 0.19 | 0.18 | 0.10 | 0.47 | 0.05 | 0.71 |
rs20541 | IL13 | 5 | coding | 97_10 | T | 0.25 | 0.05 | 0.76 | 0.32 | 0.07 | 0.17 | 0.27 | 0.12 | 0.48 |
| ||||||||||||||
IL1RL1 | IL18R1 | |||||||||||||
| ||||||||||||||
rs1420101 | IL1RL1 | 2 | coding | 68_101 | A | 0.38 | −0.16 | 0.30 | −0.22 | 0.21 | 0.02 | 0.88 | −0.10 | 0.57 |
rs12999517 | IL1RL1 | 2 | intron | −236 | C | 0.14 | −0.02 | 0.90 | −0.68 | 4.4x10−4 (9.5x10−3) | 0.33 | 0.08 | −0.12 | 0.56 |
rs3771166 | IL18R1 | 2 | intron | −1694 | T | 0.41 | 0.15 | 0.27 | −0.14 | 0.31 | −0.16 | 0.23 | −0.06 | 0.68 |
| ||||||||||||||
IL33 | ||||||||||||||
|
||||||||||||||
rs992969 | IL33 | 9 | 5′ | −31981 | A | 0.27 | 0.69 | 1.3x10−6 (1.0x10−4) | 0.11 | 0.53 | ||||
rs3939286 | IL33 | 9 | 5′ | −31579 | A | 0.33 | 0.50 | 2.0x10−4 (5.9x10−3) | 0.21 | 0.18 | ||||
|
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HLA-DQB1 | ||||||||||||||
|
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rs1063355 | HLA-DQB1 | 6 | 3UTR | 50_298 | A | 0.46 | 0.63 | 8.0x10−7 (1.0x10−4) | 0.05 | 0.71 | ||||
|
Beta is the correlation coefficient of SNP vs. gene expression value on the basis of minor allele from linear additive model.