Table 1.
Study team | Sample | Oncogene mutation | Sample size | Method | Conclusion |
---|---|---|---|---|---|
Wang et al. | Plasma | EGFR | 68 (III/IV) | ARMS/Scorpion assay | Sensitivity (22.06%), specificity (96.97%), positive predictive value (88.24%), and negative predictive value (54.70%) [20] |
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Liu et al. | Plasma | EGFR | 86 (III/IV) | ARMS | Sensitivity (67.5%), specificity (100%), and concordance rate was 84.9% [21]. |
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Goto et al. | Plasma | EGFR | 86 (III/IV) | ARMS/Scorpion assay | Sensitivity (43.1%), specificity (100%), positive predictive value (100%), negative predictive value (54.7%), and concordance ratio (66.3%) [22] |
| |||||
Kimura et al. | Plasma | EGFR | 42 (advanced stage) | ARMS/Scorpion assay | Sensitivity (85.7%), specificity (94.2%), and concordance ratio (92.9%) [23] |
| |||||
Kimura et al. | Plasma | EGFR | 27 (III/IV) | ARMS/Scorpion | Detection rate 48.1% [24] |
| |||||
Yung et al. | Plasma | EGFR | 35 (III/IV) | Digital PCR | Sensitivity (92%) and specificity (100%) [28] |
| |||||
Brevet et al. | Plasma | EGFR | 34 (III/IV) | Mass spectrometry genotyping | Detection rate 61% [51] |
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Hu et al. | Plasma | EGFR | 24 (I/II/III/IV) | High-resolution melting analysis | Positive rate was 100% for patients in stages II–IV, 81.8% (9/11) for stage I. The sensitivity was 91.67% and specificity was 100% [52]. |
| |||||
Zhao et al. | Plasma | EGFR | 111 (I/II/III/IV) | Mutant-enriched PCR | Concordance ratio (71.2%), sensitivity (35.6%), and specificity (95.5%). Sensitivity varied according to the disease stage and pathological differentiation; early stage (10%) versus advanced stage (56%). Highly differentiated (20%) patients and moderately differentiated (19%) and poorly differentiated subgroup (77.8%) [31]. |
| |||||
Jiang et al. | Plasma | EGFR | 58 (III/IV) | Mutant-enriched PCR | Sensitivity (77.8%), specificity (100%), and concordance rate (93.1%), more sensitive than the nonenriched assay [32]. |
| |||||
Bai et al. | Plasma | EGFR | 230 (III/IV) | DHPLC | Sensitivity 81.8% and specificity 89.5% [57] |
| |||||
Kim et al. | Plasma | EGFR | 35 (III/IV) | PNA-mediated PCR | Concordance in the serum and tumor samples was 17% [42]. |
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Kim et al. | Plasma | EGFR | 57 (III/IV) | PNA–LNA PCR clamp | Concordance in the serum and tumor samples was 87.7% [43]. |
| |||||
Xu et al. | Plasma | EGFR | 51 (III/IV) | ARMS/Scorpion assay | Sensitivity (50.0%) Specificity (100%) [25] |
Mutant-enriched PCR | Sensitivity (25.0%) Specificity (96.2%) | ||||
DHPLC | Sensitivity (25.0%) Specificity (92.3%) | ||||
60 (III/IV) | Direct sequencing versus Mutant-enriched PCR | Sensitivity 18.3% versus 55.0% [33] | |||
| |||||
Kuang et al. | Plasma | EGFR −T790M |
54 (III/IV) | ARMS/Scorpion assay | Detected in 54% of patients with prior clinical response to TKI and 29% of prior stable disease [19] |
| |||||
Taniguchi et al. | Plasma | EGFR −T790M |
44 (III/IV) | BEAMing | 82.6% detection rate in patient who developed PD after EGFR TKI and 43.5% detection rate in patients were never treated with EGFR TKI [48] |
| |||||
Sakai et al. | Plasma | EGFR −T790M |
75 (III/IV) | Mass spectrometry genotyping | 28% detection rate in patient who developed PD after EGFR TKI [50]. |
| |||||
Kukita et al. | Plasma | EGFR | 144 (III/IV) | Next-generation sequencers: Ion Torrent PGM | 72.7% detection rate in exon 19 deletion, 78.2% detection rate in L858R or L861Q [66] |
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Couraud et al. | Plasma | EGFR (exons 18, 19, 20, and 21) | 68 (I/II/III/IV) | Next-generation sequencers: Ion Torrent PGM | Sensitivity ranged from 55% (EGFR exon 19) to 100% (EGFR exon 18) Considering all amplicons, the sensitivity was 58% and the concordance rate was 68% [67]. |
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Wei et al. | Saliva | EGFR | 40 (III/IV) | EFIRM | Exon 19 Del (AUCs = 0.94, 95% CI, 0.82–1) and L858R (AUCs = 0.96, 95% CI, 0.90–1) [80] |
ARMS: amplification-refractory mutation system; DHPLC: denaturing high performance liquid chromatography; PNA: peptide nucleic acid; PNA-LNA: peptide nucleic acid-locked nucleic acid; BEAMing: beads, emulsions, amplification, and magnetics; NGS: next-generation sequencing; Ion Torrent PGM: Ion Torrent Personal Genome Machine (PGM) System; EFIRM: electric field-induced release and measurement.