Table 1.
Target organisms | Gene | Sequence 5′–3′ | Reference |
---|---|---|---|
All bacteria | 16S | f: TCCTACGGGAGGCAGCAGT | Hopkins et al., 2005 |
r: GGACTACCAGGGTATCTAATCCTGTT | |||
Ruminococcaceae (Clostridium leptum) | 16S | f: GCACAAGCAGTGGAGT | Kanno et al., 2009 |
r: CTTCCTCCGTTTTGTCAA | |||
Lachnospiraceae (Blautia coccoides) | 16S | f: AAATCACGGTACCTGACTAA | Matsuki et al., 2002 |
r: CTTTGAGTTCATTCTTGCGAA | |||
Bifidobacteria sp. | 16S | f: TCGCGTC(C/T)GGTGTGAAAG | Rinttilä et al., 2004 |
r: CCACATCCAGC(A/G)TCCAC | |||
Enterobacteriaceace sp. | 16S | f: CATGCCGCGTGTATGAAGAA | Huijsdens et al., 2002 |
r: CGGGTAACGTCAATGAGCAAA | |||
Bacteroidetes | 16S | f: GGTGTCGGCTTAAGTGCCAT | Rinttilä et al., 2004 |
r: CGGA(C/T)GTAAGGGCCGTGC | |||
Lactobacillaceae/Leuconostocaceae group | 16S | f: AGCAGTAGGGAATCTTCCA | Rinttilä et al., 2004 |
r: CGCCACTGGTGTTCYTCCATATA | |||
C. difficile | tcdA | f: CTCCTGGACCACTTAAACTTATTGTG | This study |
r: GCTACCGCAGAAAACTCTATGTTTT | |||
Lactococcus lactis UL719 | nisI | f: CTGAAGTACGTGTGTTTGATTCAGTTAG | Trmčiać et al., 2011 |
r: TCGCCATAATCCCATTCCGTC |