Table 2.

Lists of publicly available software usefulness in developing ancestry informative markers, global and local ancestry inferences, and admixture mapping with a link to software website.

Software	Link
ADMIXTURE	http://www.genetics.ucla.edu/software/admixture/index.html
ADMIXMAP	http://www.ucd.ie/genepi/software.html
ALDER	http://groups.csail.mit.edu/cb/alder/
ALDsuite	https://github.com/johnsonra/ALDsuite
ANCESTRYMAP	http://genepath.med.harvard.edu/~reich/Software.htm
ANCESTRYSNPMINER	https://research.cchmc.org/mershalab/AncestrySNPminer/login.php
DBM-Admix	http://sites.stat.psu.edu/~yuzhang/software/
EIGENSTRAT/smartpca	http://www.hsph.harvard.edu/faculty/alkes-price/software/
EILA	http://cran.r-project.org/
ELAI	https://www.bcm.edu/research/labs/statistical-genetics-lab/software
FRAPPE	http://med.stanford.edu/tanglab/software/frappe.html
GEMTools	http://www.wpic.pitt.edu/wpiccompgen/GemTools/GemTools.htm
HAPAA	http://hapaa.stanford.edu
HAPMIX	http://www.stats.ox.ac.uk/~myers/software.html
iAdmix	https://sites.google.com/site/vibansal/software/iAdmix
LAMP	http://lamp.icsi.berkeley.edu/lamp/
LAMP-LD	http://lamp.icsi.berkeley.edu/lamp/lampld/
LASER	http://csg.sph.umich.edu/chaolong/LASER/
parLEA	http://dm.unife.it/parlea
MaCH-admix	http://www.unc.edu/ yunmli/MaCH-Admix/
MEADMIX	http://www.mybiosoftware.com/meadmix-1-0-molecular-estimator-admixture.html
MULTIMIX	http://mathgen.stats.ox.ac.uk/genetics_software/multimix/multimix.html
NGSadmix	http://www.popgen.dk/software/index.php/NgsAdmix
PCAdmix	https://sites.google.com/site/pcadmix/home
PSMIX	http://zhaocenter.org/labcode/PSMix/psmixreadme.txt
RFMix	http://med.stanford.edu/bustamantelab/
SABER	http://med.stanford.edu/tanglab/software/saber.html
SEQMIX	http://genome.sph.umich.edu/wiki/SEQMIX
SNAP	https://www.broadinstitute.org/mpg/snap/ldsearchpw.php
SPSmart	http://spsmart.cesga.es/hapmap.php?dataSet=hapmap
STRUCTURE	http://pritchardlab.stanford.edu/software.html