Skip to main content
. 2015 Sep 9;112(38):E5343–E5350. doi: 10.1073/pnas.1506468112

Table 2.

Summary of AMA1 genetic data

Region N S dN dS k π Jukes Cantor H Hd H Tajima's D Fu and Li's D* Fu and Li's F*
All 56 13 (13) 10 3 4.041 0.0032 8 0.771 1.259 1.513** 1.688**
Asia 7 12 (12) 9 3 6 0.00475 4 0.857 2 1.225 1.573 1.642**
Egypt/Libya 7 3 (3) 0 3 1.714 0.00135 2 0.571 0 1.811 1.297 1.522
Europe/United States 6 4 (4) 1 3 2.4 0.00189 3 0.8 0 1.640 1.641 1.670
Nigeria 31 11 (3) 8 3 4.275 0.00338 4 0.546 2 1.766 1.440** 1.805**
Venezuela 5 2 (2) 0 2 1.2 0.00095 2 0.6 0 1.459 1.459 1.432

All analyses were restricted to the signal peptide cleaved EtAMA1 ectodomain. Tajima’s D and Fu and Li’s D* and F* tests were used to assess of the extent or neutrality of signatures of selection with significance: **P < 0.05; P < 0.02. All measures were calculated using DnaSP v5.10.01. dN, the number of nonsynonymous variant sites; dS, the number of synonymous variant sites; H, the number of sequence haplotypes detected; H, the number of haplotypes specific to a region; Hd, the haplotype diversity; k, the average number of pairwise differences; N, the number of sequences tested; π, nucleotide diversity, calculated with the Jukes Cantor correction; S, the number of variant sites detected, with the number of parsimony-informative variant sites shown in parentheses.